Hb_000034_050

Information

Type -
Description -
Location Contig34: 108917-115753
Sequence    

Annotation

kegg
ID rcu:RCOM_0741630
description hypothetical protein
nr
ID XP_012076977.1
description PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35475: 108921-115833 , PASA_asmbl_35476: 110396-110801
cDNA
(Sanger)
(ID:Location)		 002_J07.ab1: 108990-109755 , 006_E17.ab1: 108985-109710 , 014_J08.ab1: 108938-109677 , 018_K19.ab1: 108985-109708 , 019_B07.ab1: 108938-109582 , 032_O21.ab1: 108943-109357 , 036_M14.ab1: 108921-109676 , 045_P18.ab1: 108921-109610

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000034_050 0.0 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
2 Hb_002400_180 0.0593752244 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000322_100 0.0615192846 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
4 Hb_009265_080 0.0640588774 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
5 Hb_001863_110 0.0641774873 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_003581_120 0.0668108336 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
7 Hb_000390_060 0.0680273958 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
8 Hb_003362_040 0.0690158253 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
9 Hb_000803_300 0.0710559095 - - nuclear movement protein nudc, putative [Ricinus communis]
10 Hb_000048_140 0.0719715708 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
11 Hb_002716_140 0.0741174662 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
12 Hb_010222_080 0.0749381546 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
13 Hb_010222_030 0.0763810111 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
14 Hb_004678_060 0.076743034 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_000244_250 0.0774500417 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
16 Hb_000661_050 0.0775376901 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
17 Hb_000184_110 0.0776537428 - - hypothetical protein F383_18769 [Gossypium arboreum]
18 Hb_000915_050 0.0780943625 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008695_120 0.0781107922 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
20 Hb_002200_130 0.0782964578 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000034_050 Hb_000034_050 Hb_002400_180 Hb_002400_180 Hb_000034_050--Hb_002400_180 Hb_000322_100 Hb_000322_100 Hb_000034_050--Hb_000322_100 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_001863_110 Hb_001863_110 Hb_000034_050--Hb_001863_110 Hb_003581_120 Hb_003581_120 Hb_000034_050--Hb_003581_120 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_000803_300 Hb_000803_300 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_008695_120 Hb_008695_120 Hb_000322_100--Hb_008695_120 Hb_007336_020 Hb_007336_020 Hb_000322_100--Hb_007336_020 Hb_008864_110 Hb_008864_110 Hb_000322_100--Hb_008864_110 Hb_031091_010 Hb_031091_010 Hb_000322_100--Hb_031091_010 Hb_006951_020 Hb_006951_020 Hb_000322_100--Hb_006951_020 Hb_002007_350 Hb_002007_350 Hb_009265_080--Hb_002007_350 Hb_008253_010 Hb_008253_010 Hb_009265_080--Hb_008253_010 Hb_009265_080--Hb_004678_060 Hb_009265_080--Hb_002400_180 Hb_009265_080--Hb_000803_300 Hb_004195_280 Hb_004195_280 Hb_009265_080--Hb_004195_280 Hb_000335_010 Hb_000335_010 Hb_001863_110--Hb_000335_010 Hb_001863_110--Hb_003581_120 Hb_010222_030 Hb_010222_030 Hb_001863_110--Hb_010222_030 Hb_001863_110--Hb_002400_180 Hb_002174_060 Hb_002174_060 Hb_001863_110--Hb_002174_060 Hb_003581_120--Hb_008695_120 Hb_003581_120--Hb_002097_090 Hb_003581_120--Hb_000803_300 Hb_001019_170 Hb_001019_170 Hb_003581_120--Hb_001019_170 Hb_003434_060 Hb_003434_060 Hb_000390_060--Hb_003434_060 Hb_000230_330 Hb_000230_330 Hb_000390_060--Hb_000230_330 Hb_000120_500 Hb_000120_500 Hb_000390_060--Hb_000120_500 Hb_001584_110 Hb_001584_110 Hb_000390_060--Hb_001584_110 Hb_000316_030 Hb_000316_030 Hb_000390_060--Hb_000316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
454.235 194.252 113.445 167.012 439.046 534.262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
267.589 179.147 271.11 135.495 142.639

CAGE analysis