Hb_000034_080

Information

Type -
Description -
Location Contig34: 176858-178919
Sequence    

Annotation

kegg
ID rcu:RCOM_1039400
description mads box protein, putative
nr
ID XP_012067997.1
description PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FVC1
description MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1
trembl
ID B9RJW8
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1039400 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein agl24-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35479: 176881-196882 , PASA_asmbl_35480: 177474-177968
cDNA
(Sanger)
(ID:Location)		 008_B19.ab1: 177826-196884 , 019_C24.ab1: 177432-196882 , 052_H09.ab1: 177672-196884

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000034_080 0.0 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
2 Hb_003038_120 0.0806543425 - - rer1 protein, putative [Ricinus communis]
3 Hb_003897_040 0.0825948234 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
4 Hb_032990_010 0.0868226238 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
5 Hb_003096_060 0.0887017501 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
6 Hb_007062_040 0.0914845095 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
7 Hb_007413_040 0.0952183534 - - myo inositol monophosphatase, putative [Ricinus communis]
8 Hb_000787_150 0.095255492 - - PREDICTED: protein NDR1-like [Jatropha curcas]
9 Hb_000243_160 0.0961982578 - - glutaredoxin-1, grx1, putative [Ricinus communis]
10 Hb_002965_040 0.0971686232 - - drought-responsive family protein [Populus trichocarpa]
11 Hb_000261_230 0.0983700179 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
12 Hb_016777_040 0.0990917205 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
13 Hb_000637_140 0.0998837452 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
14 Hb_001258_100 0.1000275322 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
15 Hb_010150_020 0.1003117941 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
16 Hb_007441_020 0.1006699763 - - Rab6 [Hevea brasiliensis]
17 Hb_000205_130 0.1012997826 - - calcium ion binding protein, putative [Ricinus communis]
18 Hb_000737_030 0.101831036 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
19 Hb_003688_090 0.1037269817 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
20 Hb_021943_080 0.1041708057 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000034_080 Hb_000034_080 Hb_003038_120 Hb_003038_120 Hb_000034_080--Hb_003038_120 Hb_003897_040 Hb_003897_040 Hb_000034_080--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000034_080--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_000034_080--Hb_003096_060 Hb_007062_040 Hb_007062_040 Hb_000034_080--Hb_007062_040 Hb_007413_040 Hb_007413_040 Hb_000034_080--Hb_007413_040 Hb_000776_100 Hb_000776_100 Hb_003038_120--Hb_000776_100 Hb_003038_120--Hb_003897_040 Hb_003038_120--Hb_032990_010 Hb_003038_120--Hb_003096_060 Hb_005460_050 Hb_005460_050 Hb_003038_120--Hb_005460_050 Hb_006588_070 Hb_006588_070 Hb_003038_120--Hb_006588_070 Hb_000933_010 Hb_000933_010 Hb_003897_040--Hb_000933_010 Hb_003897_040--Hb_005460_050 Hb_002398_030 Hb_002398_030 Hb_003897_040--Hb_002398_030 Hb_000261_230 Hb_000261_230 Hb_003897_040--Hb_000261_230 Hb_003897_040--Hb_032990_010 Hb_032990_010--Hb_007062_040 Hb_032990_010--Hb_005460_050 Hb_000737_030 Hb_000737_030 Hb_032990_010--Hb_000737_030 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_032990_010--Hb_004586_060 Hb_008568_020 Hb_008568_020 Hb_003096_060--Hb_008568_020 Hb_154580_010 Hb_154580_010 Hb_003096_060--Hb_154580_010 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_001135_120 Hb_001135_120 Hb_003096_060--Hb_001135_120 Hb_007062_040--Hb_000046_570 Hb_007062_040--Hb_004586_060 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_001405_210 Hb_001405_210 Hb_007062_040--Hb_001405_210 Hb_007062_040--Hb_005460_050 Hb_000019_190 Hb_000019_190 Hb_007413_040--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_007413_040--Hb_023313_040 Hb_004096_160 Hb_004096_160 Hb_007413_040--Hb_004096_160 Hb_005730_010 Hb_005730_010 Hb_007413_040--Hb_005730_010 Hb_000236_490 Hb_000236_490 Hb_007413_040--Hb_000236_490 Hb_001931_030 Hb_001931_030 Hb_007413_040--Hb_001931_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8678 39.477 59.8587 48.664 38.1375 40.9754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.2207 17.3513 8.50487 30.1298 25.2839

CAGE analysis