Hb_000034_140

Information

Type -
Description -
Location Contig34: 267895-277112
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10610g
description POPTRDRAFT_850277; hypothetical protein
nr
ID XP_012068013.1
description PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
swissprot
ID Q56X46
description Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1
trembl
ID A0A067LAE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15887 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35487: 267674-271370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000034_140 0.0 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
2 Hb_000836_630 0.1138073493 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
3 Hb_141939_010 0.118134416 - - PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_000761_020 0.1190898114 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
5 Hb_031042_040 0.1192626156 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
6 Hb_000001_020 0.1260825092 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
7 Hb_000329_390 0.1264905563 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
8 Hb_001001_160 0.131524459 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
9 Hb_000990_080 0.131766172 - - gulonolactone oxidase, putative [Ricinus communis]
10 Hb_004970_200 0.1338797079 - - serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000883_130 0.1351279914 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
12 Hb_010174_130 0.1354704122 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
13 Hb_002377_040 0.1361225417 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_000025_200 0.1392371987 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
15 Hb_022256_040 0.1432706398 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
16 Hb_007064_040 0.1434850092 - - hypothetical protein RCOM_0254640 [Ricinus communis]
17 Hb_001855_010 0.1436298264 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
18 Hb_001360_040 0.1458434313 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
19 Hb_003106_010 0.1470607115 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_014720_160 0.1482086818 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000034_140 Hb_000034_140 Hb_000836_630 Hb_000836_630 Hb_000034_140--Hb_000836_630 Hb_141939_010 Hb_141939_010 Hb_000034_140--Hb_141939_010 Hb_000761_020 Hb_000761_020 Hb_000034_140--Hb_000761_020 Hb_031042_040 Hb_031042_040 Hb_000034_140--Hb_031042_040 Hb_000001_020 Hb_000001_020 Hb_000034_140--Hb_000001_020 Hb_000329_390 Hb_000329_390 Hb_000034_140--Hb_000329_390 Hb_007064_040 Hb_007064_040 Hb_000836_630--Hb_007064_040 Hb_000836_630--Hb_000761_020 Hb_009048_040 Hb_009048_040 Hb_000836_630--Hb_009048_040 Hb_003609_040 Hb_003609_040 Hb_000836_630--Hb_003609_040 Hb_005754_060 Hb_005754_060 Hb_000836_630--Hb_005754_060 Hb_002874_070 Hb_002874_070 Hb_000836_630--Hb_002874_070 Hb_003106_010 Hb_003106_010 Hb_141939_010--Hb_003106_010 Hb_141939_010--Hb_000836_630 Hb_011287_090 Hb_011287_090 Hb_141939_010--Hb_011287_090 Hb_141939_010--Hb_007064_040 Hb_000139_380 Hb_000139_380 Hb_141939_010--Hb_000139_380 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000761_020--Hb_000001_020 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_000761_020--Hb_007064_040 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040 Hb_002955_030 Hb_002955_030 Hb_031042_040--Hb_002955_030 Hb_010174_130 Hb_010174_130 Hb_031042_040--Hb_010174_130 Hb_002377_040 Hb_002377_040 Hb_031042_040--Hb_002377_040 Hb_002716_150 Hb_002716_150 Hb_031042_040--Hb_002716_150 Hb_000085_340 Hb_000085_340 Hb_031042_040--Hb_000085_340 Hb_000001_020--Hb_003609_040 Hb_000025_200 Hb_000025_200 Hb_000001_020--Hb_000025_200 Hb_007908_020 Hb_007908_020 Hb_000001_020--Hb_007908_020 Hb_000017_120 Hb_000017_120 Hb_000001_020--Hb_000017_120 Hb_000107_390 Hb_000107_390 Hb_000001_020--Hb_000107_390 Hb_014361_100 Hb_014361_100 Hb_000329_390--Hb_014361_100 Hb_022256_040 Hb_022256_040 Hb_000329_390--Hb_022256_040 Hb_001348_050 Hb_001348_050 Hb_000329_390--Hb_001348_050 Hb_000345_530 Hb_000345_530 Hb_000329_390--Hb_000345_530 Hb_011282_030 Hb_011282_030 Hb_000329_390--Hb_011282_030 Hb_002997_100 Hb_002997_100 Hb_000329_390--Hb_002997_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2201 0.588313 7.11013 4.35887 15.4875 14.6321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9043 5.38644 14.9522 2.225 2.3728

CAGE analysis