Hb_000035_020

Information

Type -
Description -
Location Contig35: 20856-25157
Sequence    

Annotation

kegg
ID rcu:RCOM_0922010
description transferase, putative (EC:2.3.1.144)
nr
ID XP_012076455.1
description PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
swissprot
ID Q94CD1
description Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1
trembl
ID B9RNX7
description Transferase, putative OS=Ricinus communis GN=RCOM_0922010 PE=4 SV=1
Gene Ontology
ID GO:0043231
description omega-hydroxypalmitate o-feruloyl transferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36388: 24034-24340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_020 0.0 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
2 Hb_134813_010 0.1315215796 - - aldo/keto reductase, putative [Ricinus communis]
3 Hb_021313_010 0.1512057774 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
4 Hb_031330_020 0.1661902962 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_000683_080 0.1749342912 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
6 Hb_000300_680 0.1775374974 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
7 Hb_011053_020 0.1824282061 - - lipoic acid synthetase, putative [Ricinus communis]
8 Hb_159308_020 0.1830358818 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
9 Hb_000705_270 0.1834180274 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
10 Hb_000414_180 0.1872157497 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
11 Hb_182424_020 0.1901725735 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
12 Hb_007002_010 0.1911662331 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
13 Hb_000106_030 0.1955406834 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000473_060 0.1959355479 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
15 Hb_003778_020 0.1985424579 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_000866_050 0.2022689123 - - phosphate transporter [Manihot esculenta]
17 Hb_010288_060 0.2036985742 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
18 Hb_000390_030 0.2088240375 - - hypothetical protein ZEAMMB73_364791 [Zea mays]
19 Hb_000975_170 0.209854812 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
20 Hb_000616_030 0.2107674438 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_000035_020 Hb_000035_020 Hb_134813_010 Hb_134813_010 Hb_000035_020--Hb_134813_010 Hb_021313_010 Hb_021313_010 Hb_000035_020--Hb_021313_010 Hb_031330_020 Hb_031330_020 Hb_000035_020--Hb_031330_020 Hb_000683_080 Hb_000683_080 Hb_000035_020--Hb_000683_080 Hb_000300_680 Hb_000300_680 Hb_000035_020--Hb_000300_680 Hb_011053_020 Hb_011053_020 Hb_000035_020--Hb_011053_020 Hb_134813_010--Hb_031330_020 Hb_134813_010--Hb_000300_680 Hb_002305_010 Hb_002305_010 Hb_134813_010--Hb_002305_010 Hb_000866_050 Hb_000866_050 Hb_134813_010--Hb_000866_050 Hb_003778_020 Hb_003778_020 Hb_134813_010--Hb_003778_020 Hb_000890_110 Hb_000890_110 Hb_021313_010--Hb_000890_110 Hb_158144_020 Hb_158144_020 Hb_021313_010--Hb_158144_020 Hb_000058_080 Hb_000058_080 Hb_021313_010--Hb_000058_080 Hb_021313_010--Hb_000683_080 Hb_000390_030 Hb_000390_030 Hb_021313_010--Hb_000390_030 Hb_031330_020--Hb_000300_680 Hb_001916_150 Hb_001916_150 Hb_031330_020--Hb_001916_150 Hb_031330_020--Hb_003778_020 Hb_000975_050 Hb_000975_050 Hb_031330_020--Hb_000975_050 Hb_031330_020--Hb_011053_020 Hb_007002_010 Hb_007002_010 Hb_000683_080--Hb_007002_010 Hb_000495_080 Hb_000495_080 Hb_000683_080--Hb_000495_080 Hb_000352_220 Hb_000352_220 Hb_000683_080--Hb_000352_220 Hb_000683_080--Hb_000890_110 Hb_003226_190 Hb_003226_190 Hb_000683_080--Hb_003226_190 Hb_000189_520 Hb_000189_520 Hb_000683_080--Hb_000189_520 Hb_000616_030 Hb_000616_030 Hb_000300_680--Hb_000616_030 Hb_000329_080 Hb_000329_080 Hb_000300_680--Hb_000329_080 Hb_000300_680--Hb_001916_150 Hb_000163_110 Hb_000163_110 Hb_000300_680--Hb_000163_110 Hb_000300_680--Hb_000975_050 Hb_183963_010 Hb_183963_010 Hb_011053_020--Hb_183963_010 Hb_011053_020--Hb_007002_010 Hb_000012_010 Hb_000012_010 Hb_011053_020--Hb_000012_010 Hb_000023_210 Hb_000023_210 Hb_011053_020--Hb_000023_210 Hb_011053_020--Hb_000866_050 Hb_011053_020--Hb_000189_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.026814 0.0217747 0.137215 0.658271 0.0343803 0.0444717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136091 0.128487 0.202032 0.469411 1.57537

CAGE analysis