Hb_000035_040

Information

Type transcription factor
Description TF Family: PHD
Location Contig35: 34674-61363
Sequence    

Annotation

kegg
ID rcu:RCOM_0921900
description chromodomain helicase DNA binding protein, putative (EC:2.7.11.1)
nr
ID XP_012076452.1
description PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
swissprot
ID Q9S775
description CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1
trembl
ID A0A067KBL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07103 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gymnos family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36389: 34681-62707 , PASA_asmbl_36390: 34681-54944 , PASA_asmbl_36392: 44610-45138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_040 0.0 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
2 Hb_002652_040 0.0422756155 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
3 Hb_000424_010 0.0476095792 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
4 Hb_031754_010 0.0587817864 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
5 Hb_000331_190 0.0593916342 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
6 Hb_000531_090 0.059906738 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
7 Hb_002043_170 0.0611339113 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
8 Hb_000343_210 0.0612369784 - - ran-binding protein, putative [Ricinus communis]
9 Hb_001235_200 0.0629620947 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000329_130 0.0633889384 - - beta-tubulin cofactor d, putative [Ricinus communis]
11 Hb_125092_020 0.0644771885 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
12 Hb_008143_030 0.0648837023 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
13 Hb_000714_050 0.0653190636 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
14 Hb_002883_010 0.0655914598 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
15 Hb_147737_010 0.0680125486 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
16 Hb_006449_050 0.0683410302 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
17 Hb_046615_020 0.0690794441 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
18 Hb_000417_160 0.0692393388 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
19 Hb_000640_320 0.0694679953 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
20 Hb_000335_010 0.0695301937 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000035_040 Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_000035_040--Hb_002652_040 Hb_000424_010 Hb_000424_010 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000331_190 Hb_000331_190 Hb_000035_040--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000035_040--Hb_000531_090 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_002652_040--Hb_000331_190 Hb_002652_040--Hb_000424_010 Hb_125092_020 Hb_125092_020 Hb_002652_040--Hb_125092_020 Hb_002883_010 Hb_002883_010 Hb_002652_040--Hb_002883_010 Hb_175338_020 Hb_175338_020 Hb_002652_040--Hb_175338_020 Hb_002221_050 Hb_002221_050 Hb_000424_010--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_000424_010--Hb_000529_260 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_000424_010--Hb_175338_020 Hb_000335_010 Hb_000335_010 Hb_031754_010--Hb_000335_010 Hb_001975_020 Hb_001975_020 Hb_031754_010--Hb_001975_020 Hb_031754_010--Hb_002883_010 Hb_046615_020 Hb_046615_020 Hb_031754_010--Hb_046615_020 Hb_031754_010--Hb_000424_010 Hb_000331_190--Hb_125092_020 Hb_024990_010 Hb_024990_010 Hb_000331_190--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160 Hb_000531_090--Hb_125092_020 Hb_002893_150 Hb_002893_150 Hb_000531_090--Hb_002893_150 Hb_000789_080 Hb_000789_080 Hb_000531_090--Hb_000789_080 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010 Hb_001437_100 Hb_001437_100 Hb_002043_170--Hb_001437_100 Hb_000640_320 Hb_000640_320 Hb_002043_170--Hb_000640_320 Hb_002043_170--Hb_046615_020 Hb_002043_170--Hb_002883_010 Hb_002043_170--Hb_000335_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.3967 36.5692 24.3473 19.1429 79.6432 75.6846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.41 17.9543 26.9679 35.6788 23.9438

CAGE analysis