Hb_000035_050

Information

Type -
Description -
Location Contig35: 71907-73127
Sequence    

Annotation

kegg
ID rcu:RCOM_0921770
description ccr4-associated factor, putative (EC:3.1.13.4)
nr
ID XP_012076450.1
description PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
swissprot
ID Q9SKZ2
description Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2
trembl
ID A0A067KMK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07101 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ccr4-associated factor 1 homolog 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36393: 71698-73112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_050 0.0 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
2 Hb_004117_170 0.0685645088 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
3 Hb_013358_020 0.076424681 - - ccr4-associated factor, putative [Ricinus communis]
4 Hb_005714_100 0.0786790611 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
5 Hb_018790_050 0.0932570515 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
6 Hb_056196_060 0.0956245353 - - hexokinase [Manihot esculenta]
7 Hb_001376_010 0.098166347 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
8 Hb_007253_010 0.1019414498 - - syntaxin, putative [Ricinus communis]
9 Hb_000749_070 0.1044049364 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
10 Hb_000009_200 0.104755675 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
11 Hb_003581_280 0.1109435228 - - KINASE 2B family protein [Populus trichocarpa]
12 Hb_001135_030 0.1115934994 - - PREDICTED: interaptin-like [Jatropha curcas]
13 Hb_008112_010 0.1118401013 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
14 Hb_002875_070 0.1172273852 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
15 Hb_159809_050 0.1183601738 - - AT14A, putative [Ricinus communis]
16 Hb_002900_120 0.1193981681 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
17 Hb_003849_190 0.1225308618 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
18 Hb_084849_010 0.1225342948 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002965_050 0.1257023122 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
20 Hb_000608_280 0.1262309808 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000035_050 Hb_000035_050 Hb_004117_170 Hb_004117_170 Hb_000035_050--Hb_004117_170 Hb_013358_020 Hb_013358_020 Hb_000035_050--Hb_013358_020 Hb_005714_100 Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_018790_050 Hb_018790_050 Hb_000035_050--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_000035_050--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_000035_050--Hb_001376_010 Hb_004117_170--Hb_013358_020 Hb_004117_170--Hb_018790_050 Hb_007253_010 Hb_007253_010 Hb_004117_170--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_004117_170--Hb_000749_070 Hb_004117_170--Hb_001376_010 Hb_013358_020--Hb_000749_070 Hb_013358_020--Hb_007253_010 Hb_013358_020--Hb_018790_050 Hb_084849_010 Hb_084849_010 Hb_013358_020--Hb_084849_010 Hb_000009_200 Hb_000009_200 Hb_005714_100--Hb_000009_200 Hb_008112_010 Hb_008112_010 Hb_005714_100--Hb_008112_010 Hb_002875_070 Hb_002875_070 Hb_005714_100--Hb_002875_070 Hb_005714_100--Hb_056196_060 Hb_005714_100--Hb_001376_010 Hb_001898_130 Hb_001898_130 Hb_018790_050--Hb_001898_130 Hb_018790_050--Hb_056196_060 Hb_018790_050--Hb_007253_010 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_056196_060--Hb_008112_010 Hb_056196_060--Hb_000009_200 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_001376_010--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7326 74.9405 61.7123 70.3843 7.03127 10.2984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9579 16.4278 17.4633 15.1061 17.1409

CAGE analysis