Hb_000035_080

Information

Type -
Description -
Location Contig35: 109227-111595
Sequence    

Annotation

kegg
ID rcu:RCOM_0921730
description ubiquitin-protein ligase, putative
nr
ID XP_012076447.1
description PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
swissprot
ID Q9SNC6
description U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1
trembl
ID A0A067KET4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07099 PE=4 SV=1
Gene Ontology
ID GO:0016874
description u-box domain-containing protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36396: 109206-111552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_080 0.0 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
2 Hb_004125_010 0.106796794 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
3 Hb_074399_010 0.1183483113 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
4 Hb_002783_220 0.1217480872 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
5 Hb_000258_220 0.1223942987 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
6 Hb_000668_060 0.1289664102 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
7 Hb_000000_330 0.1302621221 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
8 Hb_029584_120 0.1302980301 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
9 Hb_003964_080 0.133842429 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
10 Hb_000331_140 0.134658587 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
11 Hb_142911_010 0.135577883 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
12 Hb_000703_160 0.13628093 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
13 Hb_161568_010 0.13916119 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
14 Hb_002028_190 0.142041935 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
15 Hb_000497_190 0.142292876 - - sterol isomerase, putative [Ricinus communis]
16 Hb_004228_120 0.1438688819 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
17 Hb_000152_190 0.1456268216 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
18 Hb_005511_130 0.1484916365 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
19 Hb_000526_010 0.1492660974 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
20 Hb_004013_030 0.1493349108 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]

Gene co-expression network

sample Hb_000035_080 Hb_000035_080 Hb_004125_010 Hb_004125_010 Hb_000035_080--Hb_004125_010 Hb_074399_010 Hb_074399_010 Hb_000035_080--Hb_074399_010 Hb_002783_220 Hb_002783_220 Hb_000035_080--Hb_002783_220 Hb_000258_220 Hb_000258_220 Hb_000035_080--Hb_000258_220 Hb_000668_060 Hb_000668_060 Hb_000035_080--Hb_000668_060 Hb_000000_330 Hb_000000_330 Hb_000035_080--Hb_000000_330 Hb_000987_040 Hb_000987_040 Hb_004125_010--Hb_000987_040 Hb_004125_010--Hb_002783_220 Hb_004125_010--Hb_000000_330 Hb_002028_190 Hb_002028_190 Hb_004125_010--Hb_002028_190 Hb_000656_160 Hb_000656_160 Hb_004125_010--Hb_000656_160 Hb_000703_160 Hb_000703_160 Hb_074399_010--Hb_000703_160 Hb_029584_120 Hb_029584_120 Hb_074399_010--Hb_029584_120 Hb_074399_010--Hb_000258_220 Hb_003687_080 Hb_003687_080 Hb_074399_010--Hb_003687_080 Hb_007919_110 Hb_007919_110 Hb_074399_010--Hb_007919_110 Hb_004013_030 Hb_004013_030 Hb_074399_010--Hb_004013_030 Hb_006775_120 Hb_006775_120 Hb_002783_220--Hb_006775_120 Hb_000364_170 Hb_000364_170 Hb_002783_220--Hb_000364_170 Hb_002783_220--Hb_000000_330 Hb_005333_060 Hb_005333_060 Hb_002783_220--Hb_005333_060 Hb_019654_050 Hb_019654_050 Hb_002783_220--Hb_019654_050 Hb_002783_220--Hb_000987_040 Hb_000258_220--Hb_029584_120 Hb_000134_120 Hb_000134_120 Hb_000258_220--Hb_000134_120 Hb_000503_020 Hb_000503_020 Hb_000258_220--Hb_000503_020 Hb_000054_040 Hb_000054_040 Hb_000258_220--Hb_000054_040 Hb_003540_080 Hb_003540_080 Hb_000258_220--Hb_003540_080 Hb_000320_050 Hb_000320_050 Hb_000668_060--Hb_000320_050 Hb_003964_080 Hb_003964_080 Hb_000668_060--Hb_003964_080 Hb_000260_650 Hb_000260_650 Hb_000668_060--Hb_000260_650 Hb_000668_060--Hb_074399_010 Hb_000940_210 Hb_000940_210 Hb_000668_060--Hb_000940_210 Hb_000000_330--Hb_074399_010 Hb_000000_330--Hb_006775_120 Hb_164010_050 Hb_164010_050 Hb_000000_330--Hb_164010_050 Hb_000003_030 Hb_000003_030 Hb_000000_330--Hb_000003_030 Hb_003540_050 Hb_003540_050 Hb_000000_330--Hb_003540_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58806 3.17766 15.2535 14.2364 4.0836 3.07221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11177 1.96332 3.89842 5.03869 2.95044

CAGE analysis