Hb_000035_150

Information

Type transcription factor
Description TF Family: WRKY
Location Contig35: 216246-217793
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02480g
description POPTRDRAFT_779120; hypothetical protein
nr
ID XP_012076437.1
description PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
swissprot
ID Q93WT0
description Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1
trembl
ID S5CS62
description Uncharacterized protein OS=Jatropha curcas GN=WRKY29 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36406: 216483-216647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_150 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
2 Hb_007643_060 0.046761975 - - -
3 Hb_003992_130 0.0632485114 - - unnamed protein product [Vitis vinifera]
4 Hb_007951_020 0.0750004923 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
5 Hb_006615_220 0.0869035804 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
6 Hb_003626_020 0.0893599875 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
7 Hb_004213_010 0.0924729601 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_001153_160 0.0942456106 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
9 Hb_000343_010 0.0990885115 - - F3F9.11 [Arabidopsis thaliana]
10 Hb_002205_160 0.1062055824 - - chalcone isomerase [Hibiscus cannabinus]
11 Hb_012691_010 0.1084160318 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
12 Hb_005834_050 0.1118420255 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
13 Hb_005743_010 0.1123096176 - - RING/U-box superfamily protein, putative [Theobroma cacao]
14 Hb_002995_010 0.1127249968 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
15 Hb_008643_220 0.1182939924 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
16 Hb_027337_010 0.1204827981 - - Potassium transporter, putative [Ricinus communis]
17 Hb_004607_020 0.1235005438 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
18 Hb_108576_020 0.1236150664 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002170_060 0.1247514645 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
20 Hb_010407_150 0.1292734906 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]

Gene co-expression network

sample Hb_000035_150 Hb_000035_150 Hb_007643_060 Hb_007643_060 Hb_000035_150--Hb_007643_060 Hb_003992_130 Hb_003992_130 Hb_000035_150--Hb_003992_130 Hb_007951_020 Hb_007951_020 Hb_000035_150--Hb_007951_020 Hb_006615_220 Hb_006615_220 Hb_000035_150--Hb_006615_220 Hb_003626_020 Hb_003626_020 Hb_000035_150--Hb_003626_020 Hb_004213_010 Hb_004213_010 Hb_000035_150--Hb_004213_010 Hb_007643_060--Hb_006615_220 Hb_007643_060--Hb_007951_020 Hb_012691_010 Hb_012691_010 Hb_007643_060--Hb_012691_010 Hb_005743_010 Hb_005743_010 Hb_007643_060--Hb_005743_010 Hb_000343_010 Hb_000343_010 Hb_007643_060--Hb_000343_010 Hb_003992_130--Hb_004213_010 Hb_001153_160 Hb_001153_160 Hb_003992_130--Hb_001153_160 Hb_003992_130--Hb_003626_020 Hb_027337_010 Hb_027337_010 Hb_003992_130--Hb_027337_010 Hb_108576_020 Hb_108576_020 Hb_003992_130--Hb_108576_020 Hb_007951_020--Hb_003626_020 Hb_007951_020--Hb_012691_010 Hb_007951_020--Hb_005743_010 Hb_007951_020--Hb_000343_010 Hb_006615_220--Hb_005743_010 Hb_006615_220--Hb_000343_010 Hb_006266_010 Hb_006266_010 Hb_006615_220--Hb_006266_010 Hb_001310_060 Hb_001310_060 Hb_006615_220--Hb_001310_060 Hb_000205_180 Hb_000205_180 Hb_003626_020--Hb_000205_180 Hb_004607_020 Hb_004607_020 Hb_003626_020--Hb_004607_020 Hb_003626_020--Hb_027337_010 Hb_003626_020--Hb_001310_060 Hb_004213_010--Hb_001153_160 Hb_004213_010--Hb_108576_020 Hb_007313_030 Hb_007313_030 Hb_004213_010--Hb_007313_030 Hb_003101_020 Hb_003101_020 Hb_004213_010--Hb_003101_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.53859 23.0775 5.28796 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0485594 0 0 3.79063 4.46437

CAGE analysis