Hb_000035_180

Information

Type transcription factor
Description TF Family: WRKY
Location Contig35: 249403-252399
Sequence    

Annotation

kegg
ID rcu:RCOM_0920910
description WRKY transcription factor, putative
nr
ID XP_012076428.1
description PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
swissprot
ID P59583
description Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1
trembl
ID M9TMB9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY03 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36408: 242368-248797 , PASA_asmbl_36409: 250749-251140 , PASA_asmbl_36410: 251224-251715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_180 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
2 Hb_000146_070 0.0547789646 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
3 Hb_156279_020 0.057283247 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
4 Hb_002078_350 0.0590865553 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
5 Hb_007479_040 0.0595573496 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000340_180 0.0634274369 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
7 Hb_000331_260 0.065530721 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
8 Hb_000373_070 0.0667970488 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
9 Hb_000215_110 0.067822541 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
10 Hb_004143_060 0.0688925008 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000331_550 0.0697521454 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
12 Hb_000768_090 0.0712624067 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
13 Hb_004934_100 0.0713537629 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011386_010 0.0742070939 - - mitochondrial carrier protein, putative [Ricinus communis]
15 Hb_000468_060 0.074355492 - - ku P70 DNA helicase, putative [Ricinus communis]
16 Hb_005269_070 0.0747885761 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
17 Hb_003226_140 0.0764571013 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
18 Hb_001123_040 0.076477738 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
19 Hb_010964_040 0.0769091103 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
20 Hb_003304_020 0.077320817 - - Polyadenylate-binding protein RBP47C [Glycine soja]

Gene co-expression network

sample Hb_000035_180 Hb_000035_180 Hb_000146_070 Hb_000146_070 Hb_000035_180--Hb_000146_070 Hb_156279_020 Hb_156279_020 Hb_000035_180--Hb_156279_020 Hb_002078_350 Hb_002078_350 Hb_000035_180--Hb_002078_350 Hb_007479_040 Hb_007479_040 Hb_000035_180--Hb_007479_040 Hb_000340_180 Hb_000340_180 Hb_000035_180--Hb_000340_180 Hb_000331_260 Hb_000331_260 Hb_000035_180--Hb_000331_260 Hb_000146_070--Hb_002078_350 Hb_000373_070 Hb_000373_070 Hb_000146_070--Hb_000373_070 Hb_000684_470 Hb_000684_470 Hb_000146_070--Hb_000684_470 Hb_000146_070--Hb_156279_020 Hb_003226_140 Hb_003226_140 Hb_000146_070--Hb_003226_140 Hb_156279_020--Hb_000331_260 Hb_005269_070 Hb_005269_070 Hb_156279_020--Hb_005269_070 Hb_156279_020--Hb_002078_350 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_156279_020--Hb_000684_470 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_002110_190 Hb_002110_190 Hb_007479_040--Hb_002110_190 Hb_000028_480 Hb_000028_480 Hb_007479_040--Hb_000028_480 Hb_002044_150 Hb_002044_150 Hb_007479_040--Hb_002044_150 Hb_004567_090 Hb_004567_090 Hb_007479_040--Hb_004567_090 Hb_002518_260 Hb_002518_260 Hb_007479_040--Hb_002518_260 Hb_004254_090 Hb_004254_090 Hb_007479_040--Hb_004254_090 Hb_003938_090 Hb_003938_090 Hb_000340_180--Hb_003938_090 Hb_001278_100 Hb_001278_100 Hb_000340_180--Hb_001278_100 Hb_005496_140 Hb_005496_140 Hb_000340_180--Hb_005496_140 Hb_000003_230 Hb_000003_230 Hb_000340_180--Hb_000003_230 Hb_004058_030 Hb_004058_030 Hb_000340_180--Hb_004058_030 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_000331_260--Hb_005269_070 Hb_000215_110 Hb_000215_110 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59673 1.7542 2.33492 2.05772 2.00733 2.88578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.42933 3.0717 2.99982 2.50449 1.95691

CAGE analysis