Hb_000035_190

Information

Type -
Description -
Location Contig35: 253865-256360
Sequence    

Annotation

kegg
ID rcu:RCOM_0405710
description hypothetical protein
nr
ID XP_002532403.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O48533
description Protein POLYCHOME OS=Arabidopsis thaliana GN=PYM PE=1 SV=1
trembl
ID B9T2D4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0405710 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein polychome

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36411: 253348-254255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003018_210 0.0620495636 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
3 Hb_001699_070 0.0740371733 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003398_050 0.0811091485 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
5 Hb_003368_070 0.085846044 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
6 Hb_162378_020 0.0861750426 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
7 Hb_001220_020 0.0874778311 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
8 Hb_004174_030 0.0906062852 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
9 Hb_004032_390 0.0906706745 - - CDK, putative [Ricinus communis]
10 Hb_004097_030 0.0919287991 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
11 Hb_119044_040 0.0921715496 - - cyclin B, putative [Ricinus communis]
12 Hb_003776_050 0.0993283649 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
13 Hb_064396_010 0.0997591899 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_002928_150 0.0999946231 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
15 Hb_007558_110 0.10118961 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
16 Hb_005914_100 0.1018016718 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005141_020 0.1027493661 - - laccase, putative [Ricinus communis]
18 Hb_001235_040 0.1054466017 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
19 Hb_000614_200 0.1061828419 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
20 Hb_001864_040 0.1065355682 - - PREDICTED: kinesin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_190 Hb_000035_190 Hb_003018_210 Hb_003018_210 Hb_000035_190--Hb_003018_210 Hb_001699_070 Hb_001699_070 Hb_000035_190--Hb_001699_070 Hb_003398_050 Hb_003398_050 Hb_000035_190--Hb_003398_050 Hb_003368_070 Hb_003368_070 Hb_000035_190--Hb_003368_070 Hb_162378_020 Hb_162378_020 Hb_000035_190--Hb_162378_020 Hb_001220_020 Hb_001220_020 Hb_000035_190--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_003018_210--Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_003018_210--Hb_004097_030 Hb_003018_210--Hb_001699_070 Hb_003018_210--Hb_003398_050 Hb_003018_210--Hb_001220_020 Hb_001699_070--Hb_003368_070 Hb_119044_040 Hb_119044_040 Hb_001699_070--Hb_119044_040 Hb_001699_070--Hb_003398_050 Hb_003776_050 Hb_003776_050 Hb_001699_070--Hb_003776_050 Hb_000614_200 Hb_000614_200 Hb_001699_070--Hb_000614_200 Hb_002928_150 Hb_002928_150 Hb_003398_050--Hb_002928_150 Hb_003398_050--Hb_001220_020 Hb_003398_050--Hb_003776_050 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100 Hb_000176_040 Hb_000176_040 Hb_003368_070--Hb_000176_040 Hb_000890_140 Hb_000890_140 Hb_003368_070--Hb_000890_140 Hb_003368_070--Hb_002928_150 Hb_001279_110 Hb_001279_110 Hb_003368_070--Hb_001279_110 Hb_003368_070--Hb_119044_040 Hb_162378_020--Hb_001220_020 Hb_011063_030 Hb_011063_030 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_162378_020--Hb_004032_390 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_004174_030 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112622 0.120694 9.27728 3.22924 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.612858 0.108346

CAGE analysis