Hb_000035_220

Information

Type -
Description -
Location Contig35: 279971-284170
Sequence    

Annotation

kegg
ID rcu:RCOM_0920870
description Endosomal P24A protein precursor, putative
nr
ID XP_012076424.1
description PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
swissprot
ID F4KIB2
description Transmembrane 9 superfamily member 8 OS=Arabidopsis thaliana GN=TMN8 PE=2 SV=1
trembl
ID A0A067KMJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07081 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36415: 279957-284134
cDNA
(Sanger)
(ID:Location)		 001_G09.ab1: 279957-282209 , 001_P22.ab1: 279957-282183 , 015_F02.ab1: 280041-280191 , 043_B17.ab1: 279957-281977

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_220 0.0 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
2 Hb_003540_080 0.0682639722 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_000510_150 0.0770747507 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
4 Hb_000665_170 0.0772618184 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
5 Hb_000256_230 0.0806532421 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
6 Hb_012194_060 0.0845109725 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
7 Hb_004126_040 0.0865028522 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000300_090 0.0878960312 - - catalytic, putative [Ricinus communis]
9 Hb_021576_070 0.0910929642 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
10 Hb_005062_110 0.0934398934 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
11 Hb_010672_020 0.094038266 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
12 Hb_000260_510 0.0961902066 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
13 Hb_000395_110 0.0969067643 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
14 Hb_000503_020 0.0969523817 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
15 Hb_002486_050 0.0990944288 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
16 Hb_000085_260 0.1029471613 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
17 Hb_183086_030 0.1030828871 - - GTPase-activating protein GYP7 [Gossypium arboreum]
18 Hb_003209_130 0.1038014707 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
19 Hb_000418_020 0.1043863441 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
20 Hb_002301_030 0.1048231339 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_220 Hb_000035_220 Hb_003540_080 Hb_003540_080 Hb_000035_220--Hb_003540_080 Hb_000510_150 Hb_000510_150 Hb_000035_220--Hb_000510_150 Hb_000665_170 Hb_000665_170 Hb_000035_220--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_000035_220--Hb_000256_230 Hb_012194_060 Hb_012194_060 Hb_000035_220--Hb_012194_060 Hb_004126_040 Hb_004126_040 Hb_000035_220--Hb_004126_040 Hb_000152_190 Hb_000152_190 Hb_003540_080--Hb_000152_190 Hb_002942_230 Hb_002942_230 Hb_003540_080--Hb_002942_230 Hb_003540_080--Hb_000510_150 Hb_000258_220 Hb_000258_220 Hb_003540_080--Hb_000258_220 Hb_003540_080--Hb_000665_170 Hb_002301_030 Hb_002301_030 Hb_000510_150--Hb_002301_030 Hb_000342_170 Hb_000342_170 Hb_000510_150--Hb_000342_170 Hb_000510_150--Hb_000665_170 Hb_000510_150--Hb_002942_230 Hb_000665_170--Hb_000256_230 Hb_003777_030 Hb_003777_030 Hb_000665_170--Hb_003777_030 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_003209_130 Hb_003209_130 Hb_000665_170--Hb_003209_130 Hb_007545_010 Hb_007545_010 Hb_000665_170--Hb_007545_010 Hb_000389_030 Hb_000389_030 Hb_000665_170--Hb_000389_030 Hb_000256_230--Hb_000389_030 Hb_000256_230--Hb_003209_130 Hb_000256_230--Hb_004126_040 Hb_000622_110 Hb_000622_110 Hb_000256_230--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_000256_230--Hb_002486_050 Hb_000265_140 Hb_000265_140 Hb_012194_060--Hb_000265_140 Hb_012194_060--Hb_002486_050 Hb_005062_110 Hb_005062_110 Hb_012194_060--Hb_005062_110 Hb_000085_260 Hb_000085_260 Hb_012194_060--Hb_000085_260 Hb_000701_030 Hb_000701_030 Hb_012194_060--Hb_000701_030 Hb_004126_040--Hb_000389_030 Hb_004126_040--Hb_000665_170 Hb_004126_040--Hb_003209_130 Hb_004126_040--Hb_000622_110 Hb_003878_200 Hb_003878_200 Hb_004126_040--Hb_003878_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.05477 7.07994 13.5465 29.8204 5.05938 8.50214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85235 3.33737 6.35641 10.5652 15.2877

CAGE analysis