Hb_000035_270

Information

Type -
Description -
Location Contig35: 302416-304063
Sequence    

Annotation

kegg
ID rcu:RCOM_0920810
description hypothetical protein
nr
ID XP_012076412.1
description PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07075 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36420: 302753-303704 , PASA_asmbl_36421: 302798-303740 , PASA_asmbl_36422: 303331-303734 , PASA_asmbl_36423: 302760-303692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_270 0.0 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
2 Hb_007827_010 0.0845209714 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
3 Hb_002759_190 0.0937174149 - - PREDICTED: protein NLRC3 [Jatropha curcas]
4 Hb_003678_020 0.1025160723 - - conserved hypothetical protein [Ricinus communis]
5 Hb_014720_110 0.1027668457 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
6 Hb_002872_050 0.1054679722 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
7 Hb_000317_260 0.1060074059 - - unknown [Populus trichocarpa]
8 Hb_062226_060 0.1146909229 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
9 Hb_000107_150 0.1153359316 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
10 Hb_003747_230 0.1155149434 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
11 Hb_000012_250 0.1164811344 - - hypothetical protein L484_019524 [Morus notabilis]
12 Hb_006846_150 0.1184973797 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001318_260 0.1187305636 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
14 Hb_001301_340 0.1194423419 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
15 Hb_002540_080 0.120160415 - - cysteine-type peptidase, putative [Ricinus communis]
16 Hb_011689_120 0.1201763983 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
17 Hb_004440_060 0.1209859826 - - aldose 1-epimerase, putative [Ricinus communis]
18 Hb_044653_040 0.12162957 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
19 Hb_027459_020 0.1241308819 - - phosphoglycerate mutase, putative [Ricinus communis]
20 Hb_012799_170 0.1249177693 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_270 Hb_000035_270 Hb_007827_010 Hb_007827_010 Hb_000035_270--Hb_007827_010 Hb_002759_190 Hb_002759_190 Hb_000035_270--Hb_002759_190 Hb_003678_020 Hb_003678_020 Hb_000035_270--Hb_003678_020 Hb_014720_110 Hb_014720_110 Hb_000035_270--Hb_014720_110 Hb_002872_050 Hb_002872_050 Hb_000035_270--Hb_002872_050 Hb_000317_260 Hb_000317_260 Hb_000035_270--Hb_000317_260 Hb_002609_200 Hb_002609_200 Hb_007827_010--Hb_002609_200 Hb_001279_080 Hb_001279_080 Hb_007827_010--Hb_001279_080 Hb_007827_010--Hb_002872_050 Hb_000107_150 Hb_000107_150 Hb_007827_010--Hb_000107_150 Hb_000431_070 Hb_000431_070 Hb_007827_010--Hb_000431_070 Hb_003747_230 Hb_003747_230 Hb_002759_190--Hb_003747_230 Hb_000012_250 Hb_000012_250 Hb_002759_190--Hb_000012_250 Hb_001863_380 Hb_001863_380 Hb_002759_190--Hb_001863_380 Hb_005494_010 Hb_005494_010 Hb_002759_190--Hb_005494_010 Hb_000227_170 Hb_000227_170 Hb_002759_190--Hb_000227_170 Hb_001900_140 Hb_001900_140 Hb_002759_190--Hb_001900_140 Hb_000069_720 Hb_000069_720 Hb_003678_020--Hb_000069_720 Hb_000110_250 Hb_000110_250 Hb_003678_020--Hb_000110_250 Hb_003678_020--Hb_014720_110 Hb_001301_110 Hb_001301_110 Hb_003678_020--Hb_001301_110 Hb_000948_160 Hb_000948_160 Hb_003678_020--Hb_000948_160 Hb_189216_020 Hb_189216_020 Hb_003678_020--Hb_189216_020 Hb_006573_190 Hb_006573_190 Hb_014720_110--Hb_006573_190 Hb_001828_150 Hb_001828_150 Hb_014720_110--Hb_001828_150 Hb_004586_420 Hb_004586_420 Hb_014720_110--Hb_004586_420 Hb_000920_200 Hb_000920_200 Hb_014720_110--Hb_000920_200 Hb_003622_030 Hb_003622_030 Hb_014720_110--Hb_003622_030 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_002872_050--Hb_000107_150 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_002872_050--Hb_011689_120 Hb_004440_060 Hb_004440_060 Hb_000317_260--Hb_004440_060 Hb_003411_090 Hb_003411_090 Hb_000317_260--Hb_003411_090 Hb_004951_060 Hb_004951_060 Hb_000317_260--Hb_004951_060 Hb_007904_230 Hb_007904_230 Hb_000317_260--Hb_007904_230 Hb_003266_030 Hb_003266_030 Hb_000317_260--Hb_003266_030 Hb_001369_790 Hb_001369_790 Hb_000317_260--Hb_001369_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5068 1.76244 7.36541 3.95062 2.81789 2.34948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.14869 8.50634 3.66747 5.2229 6.82144

CAGE analysis