Hb_000035_290

Information

Type -
Description -
Location Contig35: 321857-334586
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28150g
description POPTRDRAFT_819630; RNA recognition motif-containing family protein
nr
ID XP_002308714.1
description RNA recognition motif-containing family protein [Populus trichocarpa]
swissprot
ID Q5R7X2
description U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii GN=U2SURP PE=2 SV=1
trembl
ID B9HB72
description RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0006s28150g PE=4 SV=1
Gene Ontology
ID GO:0000166
description u2 snrnp-associated surp motif-containing protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36431: 321898-322713 , PASA_asmbl_36432: 328571-329072 , PASA_asmbl_36433: 324984-334366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_290 0.0 - - RNA recognition motif-containing family protein [Populus trichocarpa]
2 Hb_000166_130 0.0509105221 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000343_120 0.0509921124 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
4 Hb_025194_040 0.0606168686 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
5 Hb_005496_110 0.0606736008 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
6 Hb_000395_130 0.0620632569 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
7 Hb_002784_110 0.0647028884 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
8 Hb_048476_180 0.0653644475 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
9 Hb_000190_120 0.0657288762 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
10 Hb_001268_350 0.0658427728 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
11 Hb_001550_060 0.0665456377 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
12 Hb_000183_020 0.0685579397 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
13 Hb_005699_090 0.0688892088 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
14 Hb_000796_030 0.0690867153 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
15 Hb_003029_110 0.0693454608 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
16 Hb_000101_240 0.06946103 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
17 Hb_014267_010 0.0694612943 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
18 Hb_012656_030 0.0697185285 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
19 Hb_003785_040 0.0699909977 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
20 Hb_003371_110 0.0704688746 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_290 Hb_000035_290 Hb_000166_130 Hb_000166_130 Hb_000035_290--Hb_000166_130 Hb_000343_120 Hb_000343_120 Hb_000035_290--Hb_000343_120 Hb_025194_040 Hb_025194_040 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_002784_110 Hb_002784_110 Hb_000035_290--Hb_002784_110 Hb_003029_110 Hb_003029_110 Hb_000166_130--Hb_003029_110 Hb_000166_130--Hb_000343_120 Hb_001195_320 Hb_001195_320 Hb_000166_130--Hb_001195_320 Hb_003371_110 Hb_003371_110 Hb_000166_130--Hb_003371_110 Hb_001199_100 Hb_001199_100 Hb_000166_130--Hb_001199_100 Hb_000028_280 Hb_000028_280 Hb_000343_120--Hb_000028_280 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_000343_120--Hb_001199_100 Hb_000343_120--Hb_003029_110 Hb_025194_040--Hb_002784_110 Hb_025194_040--Hb_000343_120 Hb_025194_040--Hb_000166_130 Hb_000540_060 Hb_000540_060 Hb_025194_040--Hb_000540_060 Hb_009476_040 Hb_009476_040 Hb_025194_040--Hb_009476_040 Hb_000788_070 Hb_000788_070 Hb_005496_110--Hb_000788_070 Hb_004108_100 Hb_004108_100 Hb_005496_110--Hb_004108_100 Hb_001080_230 Hb_001080_230 Hb_005496_110--Hb_001080_230 Hb_000170_150 Hb_000170_150 Hb_005496_110--Hb_000170_150 Hb_005496_110--Hb_002784_110 Hb_000092_020 Hb_000092_020 Hb_000395_130--Hb_000092_020 Hb_000395_130--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000395_130--Hb_000003_190 Hb_000441_120 Hb_000441_120 Hb_000395_130--Hb_000441_120 Hb_006420_040 Hb_006420_040 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_002784_110--Hb_000788_070 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.169 30.7694 10.7623 13.6383 27.3016 30.7844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4733 17.303 20.2214 21.9378 21.7629

CAGE analysis