Hb_000035_310

Information

Type -
Description -
Location Contig35: 338016-338381
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28170g
description POPTRDRAFT_763609; hypothetical protein
nr
ID XP_002309683.2
description hypothetical protein POPTR_0006s28170g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HB74
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28170g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36435: 338110-338290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_310 0.0 - - hypothetical protein POPTR_0006s28170g [Populus trichocarpa]
2 Hb_120662_010 0.2255304404 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
3 Hb_004994_340 0.2271527399 - - -
4 Hb_002411_130 0.2280590415 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
5 Hb_000001_160 0.2368521469 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
6 Hb_009119_030 0.2403681159 - - GMFP4 [Medicago truncatula]
7 Hb_003492_010 0.2452728535 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
8 Hb_111876_010 0.2495122176 - - Auxin response factor, putative [Ricinus communis]
9 Hb_101020_010 0.2502083001 - - -
10 Hb_011174_060 0.2550200234 - - -
11 Hb_130134_030 0.2615891166 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
12 Hb_002374_560 0.2630492005 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]
13 Hb_003043_060 0.2631176182 - - -
14 Hb_003243_020 0.2671579978 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
15 Hb_144550_020 0.2674196547 - - -
16 Hb_003376_070 0.2680293979 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
17 Hb_001504_090 0.270672351 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
18 Hb_002326_060 0.2709247998 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
19 Hb_003222_010 0.2710411484 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_000853_290 0.273332508 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_310 Hb_000035_310 Hb_120662_010 Hb_120662_010 Hb_000035_310--Hb_120662_010 Hb_004994_340 Hb_004994_340 Hb_000035_310--Hb_004994_340 Hb_002411_130 Hb_002411_130 Hb_000035_310--Hb_002411_130 Hb_000001_160 Hb_000001_160 Hb_000035_310--Hb_000001_160 Hb_009119_030 Hb_009119_030 Hb_000035_310--Hb_009119_030 Hb_003492_010 Hb_003492_010 Hb_000035_310--Hb_003492_010 Hb_001935_190 Hb_001935_190 Hb_120662_010--Hb_001935_190 Hb_003043_060 Hb_003043_060 Hb_120662_010--Hb_003043_060 Hb_030627_040 Hb_030627_040 Hb_120662_010--Hb_030627_040 Hb_050686_010 Hb_050686_010 Hb_120662_010--Hb_050686_010 Hb_000329_420 Hb_000329_420 Hb_120662_010--Hb_000329_420 Hb_001901_080 Hb_001901_080 Hb_120662_010--Hb_001901_080 Hb_004994_340--Hb_009119_030 Hb_004994_340--Hb_002411_130 Hb_002518_300 Hb_002518_300 Hb_004994_340--Hb_002518_300 Hb_020805_010 Hb_020805_010 Hb_004994_340--Hb_020805_010 Hb_000159_110 Hb_000159_110 Hb_004994_340--Hb_000159_110 Hb_002320_070 Hb_002320_070 Hb_004994_340--Hb_002320_070 Hb_002411_130--Hb_000159_110 Hb_001752_040 Hb_001752_040 Hb_002411_130--Hb_001752_040 Hb_002411_130--Hb_009119_030 Hb_121467_010 Hb_121467_010 Hb_002411_130--Hb_121467_010 Hb_003376_070 Hb_003376_070 Hb_002411_130--Hb_003376_070 Hb_001767_120 Hb_001767_120 Hb_002411_130--Hb_001767_120 Hb_000001_160--Hb_003043_060 Hb_003243_020 Hb_003243_020 Hb_000001_160--Hb_003243_020 Hb_000001_160--Hb_030627_040 Hb_012340_020 Hb_012340_020 Hb_000001_160--Hb_012340_020 Hb_000001_160--Hb_002518_300 Hb_002326_060 Hb_002326_060 Hb_000001_160--Hb_002326_060 Hb_009119_030--Hb_002320_070 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_009119_030--Hb_000159_110 Hb_009119_030--Hb_001901_080 Hb_009119_030--Hb_121467_010 Hb_031069_020 Hb_031069_020 Hb_003492_010--Hb_031069_020 Hb_003492_010--Hb_003376_070 Hb_003492_010--Hb_002411_130 Hb_002742_070 Hb_002742_070 Hb_003492_010--Hb_002742_070 Hb_001907_060 Hb_001907_060 Hb_003492_010--Hb_001907_060 Hb_010128_120 Hb_010128_120 Hb_003492_010--Hb_010128_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.18187 6.89062 3.06069 8.9435 24.5207 23.632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 3.75831 0 0 1.92899

CAGE analysis