Hb_000035_320

Information

Type -
Description -
Location Contig35: 340016-343557
Sequence    

Annotation

kegg
ID rcu:RCOM_0920720
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012076401.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
swissprot
ID Q9LEW0
description Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1
trembl
ID A0A067KBI5
description Ubiquitinyl hydrolase 1 OS=Jatropha curcas GN=JCGZ_07068 PE=4 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36436: 340108-342597 , PASA_asmbl_36437: 340108-342066 , PASA_asmbl_36438: 342779-343101
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_320 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
2 Hb_000976_410 0.0623181872 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
3 Hb_000671_050 0.0635503512 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
4 Hb_148644_010 0.0654177969 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_002835_080 0.0698380251 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
6 Hb_001538_130 0.0699449905 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004032_150 0.0703701578 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
8 Hb_001198_100 0.0709430066 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
9 Hb_017224_030 0.0718564362 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
10 Hb_000395_190 0.0725061627 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
11 Hb_000003_250 0.0742307113 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
12 Hb_000512_060 0.0745835838 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
13 Hb_010128_080 0.0786359178 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
14 Hb_000365_390 0.0787046301 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
15 Hb_000172_290 0.0789129815 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
16 Hb_005144_160 0.0790617577 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
17 Hb_000099_080 0.0792017931 - - kinesin light chain, putative [Ricinus communis]
18 Hb_002685_110 0.0792124352 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
19 Hb_007416_280 0.0800893208 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005663_060 0.0801331945 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]

Gene co-expression network

sample Hb_000035_320 Hb_000035_320 Hb_000976_410 Hb_000976_410 Hb_000035_320--Hb_000976_410 Hb_000671_050 Hb_000671_050 Hb_000035_320--Hb_000671_050 Hb_148644_010 Hb_148644_010 Hb_000035_320--Hb_148644_010 Hb_002835_080 Hb_002835_080 Hb_000035_320--Hb_002835_080 Hb_001538_130 Hb_001538_130 Hb_000035_320--Hb_001538_130 Hb_004032_150 Hb_004032_150 Hb_000035_320--Hb_004032_150 Hb_000976_410--Hb_000671_050 Hb_005490_030 Hb_005490_030 Hb_000976_410--Hb_005490_030 Hb_000172_290 Hb_000172_290 Hb_000976_410--Hb_000172_290 Hb_004218_110 Hb_004218_110 Hb_000976_410--Hb_004218_110 Hb_000976_410--Hb_148644_010 Hb_001100_060 Hb_001100_060 Hb_000671_050--Hb_001100_060 Hb_000876_070 Hb_000876_070 Hb_000671_050--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_000671_050--Hb_004724_080 Hb_002105_040 Hb_002105_040 Hb_000671_050--Hb_002105_040 Hb_148644_010--Hb_002835_080 Hb_000700_110 Hb_000700_110 Hb_148644_010--Hb_000700_110 Hb_148644_010--Hb_004032_150 Hb_002477_330 Hb_002477_330 Hb_148644_010--Hb_002477_330 Hb_003195_070 Hb_003195_070 Hb_148644_010--Hb_003195_070 Hb_019280_040 Hb_019280_040 Hb_002835_080--Hb_019280_040 Hb_002182_080 Hb_002182_080 Hb_002835_080--Hb_002182_080 Hb_000010_330 Hb_000010_330 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030 Hb_000032_520 Hb_000032_520 Hb_001538_130--Hb_000032_520 Hb_001198_100 Hb_001198_100 Hb_001538_130--Hb_001198_100 Hb_000395_190 Hb_000395_190 Hb_001538_130--Hb_000395_190 Hb_000009_560 Hb_000009_560 Hb_001538_130--Hb_000009_560 Hb_015934_040 Hb_015934_040 Hb_001538_130--Hb_015934_040 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.57338 6.0092 2.94614 7.70682 5.81084 9.70311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.14909 8.37324 9.90751 5.72581 5.30199

CAGE analysis