Hb_000035_330

Information

Type -
Description -
Location Contig35: 347729-353929
Sequence    

Annotation

kegg
ID tcc:TCM_036875
description Transmembrane protein 85
nr
ID XP_007011669.1
description Transmembrane protein 85 [Theobroma cacao]
swissprot
ID Q6P011
description ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2 SV=1
trembl
ID A0A061GIQ5
description Transmembrane protein 85 OS=Theobroma cacao GN=TCM_036875 PE=4 SV=1
Gene Ontology
ID GO:0005783
description er membrane protein complex subunit 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36439: 347901-354173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_330 0.0 - - Transmembrane protein 85 [Theobroma cacao]
2 Hb_000701_030 0.0947641396 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
3 Hb_003097_140 0.0964857258 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
4 Hb_002902_130 0.0970067628 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
5 Hb_143629_130 0.0991502197 - - unnamed protein product [Coffea canephora]
6 Hb_007286_020 0.0999165642 - - hypothetical protein L484_010675 [Morus notabilis]
7 Hb_001006_270 0.1005731887 - - peptide transporter, putative [Ricinus communis]
8 Hb_005170_010 0.1027597172 - - -
9 Hb_001021_010 0.1038260187 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
10 Hb_002226_080 0.1044862736 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
11 Hb_002486_050 0.1046613868 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
12 Hb_007137_050 0.1054481156 - - Uncharacterized protein isoform 1 [Theobroma cacao]
13 Hb_003988_050 0.1061197751 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
14 Hb_004040_030 0.1071731652 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
15 Hb_010042_030 0.1078610641 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
16 Hb_003055_040 0.1080683161 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
17 Hb_003038_040 0.1092746776 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_004525_040 0.1093915914 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
19 Hb_000165_080 0.1111352452 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
20 Hb_004102_170 0.1126695475 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]

Gene co-expression network

sample Hb_000035_330 Hb_000035_330 Hb_000701_030 Hb_000701_030 Hb_000035_330--Hb_000701_030 Hb_003097_140 Hb_003097_140 Hb_000035_330--Hb_003097_140 Hb_002902_130 Hb_002902_130 Hb_000035_330--Hb_002902_130 Hb_143629_130 Hb_143629_130 Hb_000035_330--Hb_143629_130 Hb_007286_020 Hb_007286_020 Hb_000035_330--Hb_007286_020 Hb_001006_270 Hb_001006_270 Hb_000035_330--Hb_001006_270 Hb_000265_140 Hb_000265_140 Hb_000701_030--Hb_000265_140 Hb_021576_070 Hb_021576_070 Hb_000701_030--Hb_021576_070 Hb_000494_030 Hb_000494_030 Hb_000701_030--Hb_000494_030 Hb_000254_070 Hb_000254_070 Hb_000701_030--Hb_000254_070 Hb_000003_310 Hb_000003_310 Hb_000701_030--Hb_000003_310 Hb_001097_040 Hb_001097_040 Hb_000701_030--Hb_001097_040 Hb_003994_220 Hb_003994_220 Hb_003097_140--Hb_003994_220 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_007765_040 Hb_007765_040 Hb_003097_140--Hb_007765_040 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_000390_050 Hb_000390_050 Hb_003097_140--Hb_000390_050 Hb_027445_020 Hb_027445_020 Hb_003097_140--Hb_027445_020 Hb_003988_050 Hb_003988_050 Hb_002902_130--Hb_003988_050 Hb_002902_130--Hb_003097_140 Hb_000365_400 Hb_000365_400 Hb_002902_130--Hb_000365_400 Hb_002902_130--Hb_000390_050 Hb_001703_050 Hb_001703_050 Hb_002902_130--Hb_001703_050 Hb_000389_030 Hb_000389_030 Hb_002902_130--Hb_000389_030 Hb_002414_060 Hb_002414_060 Hb_143629_130--Hb_002414_060 Hb_007558_100 Hb_007558_100 Hb_143629_130--Hb_007558_100 Hb_003055_040 Hb_003055_040 Hb_143629_130--Hb_003055_040 Hb_002686_310 Hb_002686_310 Hb_143629_130--Hb_002686_310 Hb_004317_060 Hb_004317_060 Hb_143629_130--Hb_004317_060 Hb_001051_070 Hb_001051_070 Hb_007286_020--Hb_001051_070 Hb_004102_170 Hb_004102_170 Hb_007286_020--Hb_004102_170 Hb_086639_080 Hb_086639_080 Hb_007286_020--Hb_086639_080 Hb_010042_030 Hb_010042_030 Hb_007286_020--Hb_010042_030 Hb_000679_100 Hb_000679_100 Hb_007286_020--Hb_000679_100 Hb_002486_050 Hb_002486_050 Hb_007286_020--Hb_002486_050 Hb_000928_190 Hb_000928_190 Hb_001006_270--Hb_000928_190 Hb_001481_150 Hb_001481_150 Hb_001006_270--Hb_001481_150 Hb_000237_050 Hb_000237_050 Hb_001006_270--Hb_000237_050 Hb_004094_020 Hb_004094_020 Hb_001006_270--Hb_004094_020 Hb_001006_270--Hb_000701_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.2226 17.2725 16.2797 53.5258 14.717 24.7728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2327 12.1581 10.3184 28.5545 22.9894

CAGE analysis