Hb_000035_380

Information

Type -
Description -
Location Contig35: 382274-385291
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36444: 383740-385005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_380 0.0 - - -
2 Hb_000317_430 0.0458531204 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
3 Hb_060809_010 0.0651306137 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
4 Hb_001221_230 0.0696773192 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000365_360 0.0748052926 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_118419_020 0.0802482895 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
7 Hb_001214_130 0.080566987 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
8 Hb_003911_040 0.0839048996 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
9 Hb_098709_010 0.0877842763 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
10 Hb_001369_060 0.0884552749 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
11 Hb_003120_060 0.0887186303 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
12 Hb_003125_040 0.0890871356 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
13 Hb_002207_100 0.0896194733 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
14 Hb_003728_020 0.0901042188 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000977_080 0.0903628739 - - type II inositol 5-phosphatase, putative [Ricinus communis]
16 Hb_000032_570 0.0910236845 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
17 Hb_000175_070 0.0923179269 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
18 Hb_134226_010 0.0941533604 - - 40S ribosomal protein S21e, putative [Ricinus communis]
19 Hb_002097_110 0.0948972914 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000015_210 0.0949667885 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_380 Hb_000035_380 Hb_000317_430 Hb_000317_430 Hb_000035_380--Hb_000317_430 Hb_060809_010 Hb_060809_010 Hb_000035_380--Hb_060809_010 Hb_001221_230 Hb_001221_230 Hb_000035_380--Hb_001221_230 Hb_000365_360 Hb_000365_360 Hb_000035_380--Hb_000365_360 Hb_118419_020 Hb_118419_020 Hb_000035_380--Hb_118419_020 Hb_001214_130 Hb_001214_130 Hb_000035_380--Hb_001214_130 Hb_000175_070 Hb_000175_070 Hb_000317_430--Hb_000175_070 Hb_000317_430--Hb_118419_020 Hb_000317_430--Hb_060809_010 Hb_000317_430--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_000317_430--Hb_007193_100 Hb_003125_040 Hb_003125_040 Hb_060809_010--Hb_003125_040 Hb_003728_020 Hb_003728_020 Hb_060809_010--Hb_003728_020 Hb_060809_010--Hb_000175_070 Hb_003005_020 Hb_003005_020 Hb_060809_010--Hb_003005_020 Hb_001221_230--Hb_000317_430 Hb_010128_130 Hb_010128_130 Hb_001221_230--Hb_010128_130 Hb_000032_570 Hb_000032_570 Hb_001221_230--Hb_000032_570 Hb_001221_230--Hb_001214_130 Hb_001741_140 Hb_001741_140 Hb_001221_230--Hb_001741_140 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000365_360--Hb_118419_020 Hb_010436_070 Hb_010436_070 Hb_118419_020--Hb_010436_070 Hb_118419_020--Hb_000175_070 Hb_125000_010 Hb_125000_010 Hb_118419_020--Hb_125000_010 Hb_002097_110 Hb_002097_110 Hb_118419_020--Hb_002097_110 Hb_118419_020--Hb_007193_100 Hb_028639_060 Hb_028639_060 Hb_001214_130--Hb_028639_060 Hb_003642_060 Hb_003642_060 Hb_001214_130--Hb_003642_060 Hb_000905_190 Hb_000905_190 Hb_001214_130--Hb_000905_190 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.74337 2.00165 1.02259 0.878002 8.0333 10.432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.13298 8.04427 4.95466 2.8595 1.39514

CAGE analysis