Hb_000035_410

Information

Type -
Description -
Location Contig35: 404532-409769
Sequence    

Annotation

kegg
ID rcu:RCOM_0920330
description Eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012076388.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
swissprot
ID Q9C5Z1
description Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1
trembl
ID A0A067KB82
description Eukaryotic translation initiation factor 3 subunit B OS=Jatropha curcas GN=JCGZ_07057 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36450: 404578-409921
cDNA
(Sanger)
(ID:Location)		 025_E23.ab1: 404578-406860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_410 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
2 Hb_000261_030 0.0506546703 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
3 Hb_032920_130 0.0661506301 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
4 Hb_001235_230 0.067060568 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
5 Hb_027380_140 0.068307777 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
6 Hb_000785_040 0.0690059313 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
7 Hb_002044_170 0.0716705156 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
8 Hb_012053_080 0.072195696 - - AP-2 complex subunit alpha, putative [Ricinus communis]
9 Hb_007062_020 0.0723860359 - - gcn4-complementing protein, putative [Ricinus communis]
10 Hb_089140_050 0.0725945564 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
11 Hb_003884_030 0.0747547759 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
12 Hb_160459_040 0.0749362117 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
13 Hb_000176_130 0.0757495856 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
14 Hb_030627_060 0.0772493374 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
15 Hb_007426_130 0.0792829113 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
16 Hb_004223_290 0.079401584 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
17 Hb_009296_010 0.0803738317 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
18 Hb_004453_110 0.0809307135 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
19 Hb_000183_050 0.0809561096 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
20 Hb_086287_010 0.0811423526 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_410 Hb_000035_410 Hb_000261_030 Hb_000261_030 Hb_000035_410--Hb_000261_030 Hb_032920_130 Hb_032920_130 Hb_000035_410--Hb_032920_130 Hb_001235_230 Hb_001235_230 Hb_000035_410--Hb_001235_230 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_002044_170 Hb_002044_170 Hb_000035_410--Hb_002044_170 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_010417_060 Hb_010417_060 Hb_032920_130--Hb_010417_060 Hb_032920_130--Hb_000261_030 Hb_032920_130--Hb_002044_170 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_032920_130--Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_001235_230--Hb_002044_170 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_012053_080 Hb_012053_080 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_000785_040--Hb_007062_020 Hb_000785_040--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_000785_040--Hb_003966_030 Hb_000785_040--Hb_027380_140 Hb_001025_080 Hb_001025_080 Hb_000785_040--Hb_001025_080 Hb_001473_090 Hb_001473_090 Hb_000785_040--Hb_001473_090 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_002044_170--Hb_000261_030 Hb_002044_170--Hb_000176_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.1823 41.7921 29.3514 37.9705 49.5172 56.6372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8187 11.2962 24.245 33.0668 40.3436

CAGE analysis