Hb_000035_440

Information

Type -
Description -
Location Contig35: 422124-424347
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36452: 422126-424253 , PASA_asmbl_36453: 422130-423981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_440 0.0 - - -
2 Hb_002045_230 0.1094511528 - - Ammonium transporter 2 [Theobroma cacao]
3 Hb_005841_050 0.1154710705 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
4 Hb_002876_360 0.1285088492 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
5 Hb_005841_040 0.1288759885 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
6 Hb_002298_050 0.1333332597 - - serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_017862_010 0.133878644 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
8 Hb_011245_020 0.1354259444 - - Ferrochelatase [Medicago truncatula]
9 Hb_000676_240 0.1363276657 - - thioredoxin H-type 2 [Hevea brasiliensis]
10 Hb_001052_030 0.137877646 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
11 Hb_001386_050 0.1381190142 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
12 Hb_076626_010 0.140735258 - - conserved hypothetical protein [Ricinus communis]
13 Hb_146225_010 0.1407510128 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
14 Hb_000352_140 0.1416038788 - - -
15 Hb_002344_070 0.1433344989 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
16 Hb_021409_090 0.1447237708 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
17 Hb_089100_020 0.1458944006 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
18 Hb_008066_040 0.1462615411 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
19 Hb_002999_050 0.1464919762 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
20 Hb_006831_030 0.1482645929 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000035_440 Hb_000035_440 Hb_002045_230 Hb_002045_230 Hb_000035_440--Hb_002045_230 Hb_005841_050 Hb_005841_050 Hb_000035_440--Hb_005841_050 Hb_002876_360 Hb_002876_360 Hb_000035_440--Hb_002876_360 Hb_005841_040 Hb_005841_040 Hb_000035_440--Hb_005841_040 Hb_002298_050 Hb_002298_050 Hb_000035_440--Hb_002298_050 Hb_017862_010 Hb_017862_010 Hb_000035_440--Hb_017862_010 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_002326_180 Hb_002326_180 Hb_002045_230--Hb_002326_180 Hb_002045_230--Hb_005841_040 Hb_000352_140 Hb_000352_140 Hb_002045_230--Hb_000352_140 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130 Hb_002217_450 Hb_002217_450 Hb_005841_050--Hb_002217_450 Hb_146225_010 Hb_146225_010 Hb_005841_050--Hb_146225_010 Hb_001638_020 Hb_001638_020 Hb_005841_050--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_005841_050--Hb_001141_030 Hb_005841_050--Hb_017862_010 Hb_021409_090 Hb_021409_090 Hb_005841_050--Hb_021409_090 Hb_000617_050 Hb_000617_050 Hb_002876_360--Hb_000617_050 Hb_002876_360--Hb_002326_180 Hb_000106_090 Hb_000106_090 Hb_002876_360--Hb_000106_090 Hb_003638_080 Hb_003638_080 Hb_002876_360--Hb_003638_080 Hb_000395_240 Hb_000395_240 Hb_002876_360--Hb_000395_240 Hb_001102_250 Hb_001102_250 Hb_005841_040--Hb_001102_250 Hb_011245_020 Hb_011245_020 Hb_005841_040--Hb_011245_020 Hb_003043_120 Hb_003043_120 Hb_005841_040--Hb_003043_120 Hb_000676_240 Hb_000676_240 Hb_005841_040--Hb_000676_240 Hb_002759_240 Hb_002759_240 Hb_005841_040--Hb_002759_240 Hb_000373_180 Hb_000373_180 Hb_002298_050--Hb_000373_180 Hb_002298_050--Hb_005841_050 Hb_000264_020 Hb_000264_020 Hb_002298_050--Hb_000264_020 Hb_003326_020 Hb_003326_020 Hb_002298_050--Hb_003326_020 Hb_002298_050--Hb_146225_010 Hb_002053_060 Hb_002053_060 Hb_002298_050--Hb_002053_060 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_000069_100 Hb_000069_100 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_006831_030 Hb_006831_030 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2143 2.08525 3.64289 7.48261 9.42741 9.59591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.0545 60.0708 30.7281 1.18458 2.50345

CAGE analysis