Hb_000035_480

Information

Type -
Description -
Location Contig35: 446729-452870
Sequence    

Annotation

kegg
ID rcu:RCOM_0920170
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076377.1
description PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
swissprot
ID Q8RXV3
description Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1
trembl
ID A0A067KEP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07049 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 59

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36460: 446766-452829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_480 0.0 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
2 Hb_000465_070 0.0657250872 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
3 Hb_140627_010 0.0805388596 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000457_290 0.0820320506 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
5 Hb_000403_070 0.0894056369 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001892_070 0.0902518195 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
7 Hb_000392_550 0.0960217054 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_003106_100 0.0972857473 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
9 Hb_000649_140 0.1025551788 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
10 Hb_002876_020 0.1060759327 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
11 Hb_020025_010 0.1065713138 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
12 Hb_062226_060 0.107958333 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
13 Hb_000072_200 0.1080193356 - - PREDICTED: myb-like protein X [Jatropha curcas]
14 Hb_000107_150 0.1089353545 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
15 Hb_003020_260 0.1101194234 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
16 Hb_001910_010 0.1111030515 - - Dual specificity protein phosphatase, putative [Ricinus communis]
17 Hb_015183_060 0.1112254125 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
18 Hb_100886_010 0.1115563544 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_001976_040 0.1129116197 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
20 Hb_006846_150 0.1132481381 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000035_480 Hb_000035_480 Hb_000465_070 Hb_000465_070 Hb_000035_480--Hb_000465_070 Hb_140627_010 Hb_140627_010 Hb_000035_480--Hb_140627_010 Hb_000457_290 Hb_000457_290 Hb_000035_480--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_000035_480--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000035_480--Hb_001892_070 Hb_000392_550 Hb_000392_550 Hb_000035_480--Hb_000392_550 Hb_000465_070--Hb_000457_290 Hb_000465_070--Hb_000403_070 Hb_002232_060 Hb_002232_060 Hb_000465_070--Hb_002232_060 Hb_100886_010 Hb_100886_010 Hb_000465_070--Hb_100886_010 Hb_003106_100 Hb_003106_100 Hb_000465_070--Hb_003106_100 Hb_140627_010--Hb_000403_070 Hb_140627_010--Hb_000457_290 Hb_001240_010 Hb_001240_010 Hb_140627_010--Hb_001240_010 Hb_006846_150 Hb_006846_150 Hb_140627_010--Hb_006846_150 Hb_140627_010--Hb_000392_550 Hb_000457_290--Hb_000403_070 Hb_000457_290--Hb_001892_070 Hb_000457_290--Hb_002232_060 Hb_000403_070--Hb_006846_150 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_000403_070--Hb_001240_010 Hb_001016_100 Hb_001016_100 Hb_001892_070--Hb_001016_100 Hb_001892_070--Hb_000403_070 Hb_002045_060 Hb_002045_060 Hb_001892_070--Hb_002045_060 Hb_008566_030 Hb_008566_030 Hb_001892_070--Hb_008566_030 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_001369_790 Hb_001369_790 Hb_000392_550--Hb_001369_790 Hb_000032_370 Hb_000032_370 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.10272 10.8979 17.7839 20.9234 6.39423 9.05617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5186 36.2655 17.7669 22.1093 33.5511

CAGE analysis