Hb_000035_500

Information

Type -
Description -
Location Contig35: 457032-474050
Sequence    

Annotation

kegg
ID brp:103842229
description ADP-ribosylation factor 1
nr
ID XP_010525887.1
description PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]
swissprot
ID Q96361
description ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3
trembl
ID A0A067KB70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07047 PE=3 SV=1
Gene Ontology
ID GO:0005634
description adp-ribosylation factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36462: 456900-465944 , PASA_asmbl_36463: 463195-463376 , PASA_asmbl_36466: 466918-467332 , PASA_asmbl_36467: 467395-467848
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_500 0.0 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]
2 Hb_000245_220 0.0771710496 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
3 Hb_006570_140 0.0782549786 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
4 Hb_001922_170 0.0889989301 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
5 Hb_001268_240 0.091163471 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
6 Hb_000731_160 0.0973192765 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
7 Hb_029879_010 0.0988517044 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
8 Hb_003050_270 0.1024594519 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
9 Hb_002338_020 0.103337348 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
10 Hb_001629_080 0.1080128103 - - hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
11 Hb_000836_170 0.1101961805 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
12 Hb_162286_010 0.1116600005 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
13 Hb_000521_080 0.1118036469 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
14 Hb_004837_270 0.1118562968 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
15 Hb_001348_170 0.1133654157 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
16 Hb_000329_140 0.1136283628 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
17 Hb_005697_060 0.1138657516 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
18 Hb_005542_130 0.1139855696 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
19 Hb_000270_680 0.1145561063 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
20 Hb_009545_080 0.1149732767 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]

Gene co-expression network

sample Hb_000035_500 Hb_000035_500 Hb_000245_220 Hb_000245_220 Hb_000035_500--Hb_000245_220 Hb_006570_140 Hb_006570_140 Hb_000035_500--Hb_006570_140 Hb_001922_170 Hb_001922_170 Hb_000035_500--Hb_001922_170 Hb_001268_240 Hb_001268_240 Hb_000035_500--Hb_001268_240 Hb_000731_160 Hb_000731_160 Hb_000035_500--Hb_000731_160 Hb_029879_010 Hb_029879_010 Hb_000035_500--Hb_029879_010 Hb_000331_110 Hb_000331_110 Hb_000245_220--Hb_000331_110 Hb_000816_250 Hb_000816_250 Hb_000245_220--Hb_000816_250 Hb_162286_010 Hb_162286_010 Hb_000245_220--Hb_162286_010 Hb_011618_050 Hb_011618_050 Hb_000245_220--Hb_011618_050 Hb_001186_090 Hb_001186_090 Hb_000245_220--Hb_001186_090 Hb_006570_140--Hb_001922_170 Hb_000094_330 Hb_000094_330 Hb_006570_140--Hb_000094_330 Hb_005847_060 Hb_005847_060 Hb_006570_140--Hb_005847_060 Hb_001662_150 Hb_001662_150 Hb_006570_140--Hb_001662_150 Hb_006570_140--Hb_000731_160 Hb_054865_120 Hb_054865_120 Hb_001922_170--Hb_054865_120 Hb_001922_170--Hb_005847_060 Hb_001579_270 Hb_001579_270 Hb_001922_170--Hb_001579_270 Hb_002820_050 Hb_002820_050 Hb_001922_170--Hb_002820_050 Hb_001922_170--Hb_000094_330 Hb_000417_130 Hb_000417_130 Hb_001268_240--Hb_000417_130 Hb_001357_350 Hb_001357_350 Hb_001268_240--Hb_001357_350 Hb_000640_170 Hb_000640_170 Hb_001268_240--Hb_000640_170 Hb_001318_280 Hb_001318_280 Hb_001268_240--Hb_001318_280 Hb_009898_050 Hb_009898_050 Hb_001268_240--Hb_009898_050 Hb_172632_100 Hb_172632_100 Hb_001268_240--Hb_172632_100 Hb_000012_250 Hb_000012_250 Hb_000731_160--Hb_000012_250 Hb_002477_300 Hb_002477_300 Hb_000731_160--Hb_002477_300 Hb_146673_010 Hb_146673_010 Hb_000731_160--Hb_146673_010 Hb_001472_100 Hb_001472_100 Hb_000731_160--Hb_001472_100 Hb_000185_050 Hb_000185_050 Hb_000731_160--Hb_000185_050 Hb_003939_050 Hb_003939_050 Hb_029879_010--Hb_003939_050 Hb_030736_100 Hb_030736_100 Hb_029879_010--Hb_030736_100 Hb_000883_020 Hb_000883_020 Hb_029879_010--Hb_000883_020 Hb_002592_060 Hb_002592_060 Hb_029879_010--Hb_002592_060 Hb_022693_140 Hb_022693_140 Hb_029879_010--Hb_022693_140 Hb_063716_100 Hb_063716_100 Hb_029879_010--Hb_063716_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13083 0.641721 2.61576 1.35228 1.76446 1.68563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.54696 2.41266 1.24745 2.25795 2.12449

CAGE analysis