Hb_000036_020

Information

Type -
Description -
Location Contig36: 113508-117168
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000036_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002985_020 2.97044e-05 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
3 Hb_006124_020 0.0005156654 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
4 Hb_007313_020 0.0006121811 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_004332_060 0.0008464188 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000391_030 0.0013700861 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_000050_230 0.0014033859 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_002285_010 0.0014135391 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001568_100 0.001799645 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
10 Hb_001740_010 0.0029898158 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
11 Hb_001621_080 0.0034934309 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
12 Hb_013405_120 0.0038468538 - - -
13 Hb_003894_130 0.0042483681 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_008052_010 0.00469591 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002400_120 0.0048748187 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_001611_030 0.0051740587 - - -
17 Hb_027556_030 0.005709747 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
18 Hb_051719_020 0.0066763248 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
19 Hb_140406_010 0.0075727154 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
20 Hb_002553_150 0.0077388776 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]

Gene co-expression network

sample Hb_000036_020 Hb_000036_020 Hb_002985_020 Hb_002985_020 Hb_000036_020--Hb_002985_020 Hb_006124_020 Hb_006124_020 Hb_000036_020--Hb_006124_020 Hb_007313_020 Hb_007313_020 Hb_000036_020--Hb_007313_020 Hb_004332_060 Hb_004332_060 Hb_000036_020--Hb_004332_060 Hb_000391_030 Hb_000391_030 Hb_000036_020--Hb_000391_030 Hb_000050_230 Hb_000050_230 Hb_000036_020--Hb_000050_230 Hb_002985_020--Hb_006124_020 Hb_002985_020--Hb_007313_020 Hb_002985_020--Hb_004332_060 Hb_002985_020--Hb_000391_030 Hb_002985_020--Hb_000050_230 Hb_006124_020--Hb_007313_020 Hb_001568_100 Hb_001568_100 Hb_006124_020--Hb_001568_100 Hb_006124_020--Hb_004332_060 Hb_006124_020--Hb_000391_030 Hb_007313_020--Hb_004332_060 Hb_007313_020--Hb_000391_030 Hb_007313_020--Hb_000050_230 Hb_002285_010 Hb_002285_010 Hb_007313_020--Hb_002285_010 Hb_004332_060--Hb_000391_030 Hb_004332_060--Hb_000050_230 Hb_004332_060--Hb_002285_010 Hb_000391_030--Hb_000050_230 Hb_000391_030--Hb_002285_010 Hb_000050_230--Hb_002285_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.10848 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0937954 0

CAGE analysis