Hb_000036_050

Information

Type -
Description -
Location Contig36: 184702-191308
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_474507
description hypothetical protein
nr
ID XP_010462281.1
description PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
swissprot
ID Q9C8M9
description Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1
trembl
ID D7KLA8
description Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474507 PE=4 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37094: 186365-187710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000036_050 0.0 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
2 Hb_007520_020 0.0963486452 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis]
3 Hb_000283_150 0.1410156354 - - Ankyrin repeat family protein [Theobroma cacao]
4 Hb_001514_130 0.1499964615 - - hypothetical protein JCGZ_16073 [Jatropha curcas]
5 Hb_004136_040 0.1579834433 - - putative protein kinase [Arabidopsis thaliana]
6 Hb_002827_020 0.1635603438 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
7 Hb_000640_130 0.1653495922 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
8 Hb_002005_090 0.1717680851 - - conserved hypothetical protein [Ricinus communis]
9 Hb_112023_010 0.1745470114 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
10 Hb_003849_240 0.1759047271 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_000390_100 0.1787367138 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
12 Hb_000200_280 0.1797033592 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
13 Hb_000083_270 0.1797156514 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
14 Hb_010487_020 0.1822819188 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
15 Hb_001416_020 0.1824451399 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
16 Hb_000521_170 0.1835598159 - - PREDICTED: callose synthase 1 [Jatropha curcas]
17 Hb_002391_370 0.1842310745 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
18 Hb_003927_010 0.1859839554 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
19 Hb_011512_090 0.1862942084 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
20 Hb_000022_170 0.1864584988 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]

Gene co-expression network

sample Hb_000036_050 Hb_000036_050 Hb_007520_020 Hb_007520_020 Hb_000036_050--Hb_007520_020 Hb_000283_150 Hb_000283_150 Hb_000036_050--Hb_000283_150 Hb_001514_130 Hb_001514_130 Hb_000036_050--Hb_001514_130 Hb_004136_040 Hb_004136_040 Hb_000036_050--Hb_004136_040 Hb_002827_020 Hb_002827_020 Hb_000036_050--Hb_002827_020 Hb_000640_130 Hb_000640_130 Hb_000036_050--Hb_000640_130 Hb_003849_240 Hb_003849_240 Hb_007520_020--Hb_003849_240 Hb_001799_190 Hb_001799_190 Hb_007520_020--Hb_001799_190 Hb_000009_120 Hb_000009_120 Hb_007520_020--Hb_000009_120 Hb_007520_020--Hb_000640_130 Hb_003927_010 Hb_003927_010 Hb_007520_020--Hb_003927_010 Hb_001416_020 Hb_001416_020 Hb_000283_150--Hb_001416_020 Hb_000283_150--Hb_000640_130 Hb_000283_150--Hb_002827_020 Hb_000521_170 Hb_000521_170 Hb_000283_150--Hb_000521_170 Hb_020178_060 Hb_020178_060 Hb_000283_150--Hb_020178_060 Hb_000200_280 Hb_000200_280 Hb_001514_130--Hb_000200_280 Hb_000227_060 Hb_000227_060 Hb_001514_130--Hb_000227_060 Hb_001575_010 Hb_001575_010 Hb_001514_130--Hb_001575_010 Hb_005214_090 Hb_005214_090 Hb_001514_130--Hb_005214_090 Hb_004218_030 Hb_004218_030 Hb_001514_130--Hb_004218_030 Hb_000684_290 Hb_000684_290 Hb_001514_130--Hb_000684_290 Hb_008568_010 Hb_008568_010 Hb_004136_040--Hb_008568_010 Hb_000976_040 Hb_000976_040 Hb_004136_040--Hb_000976_040 Hb_000003_340 Hb_000003_340 Hb_004136_040--Hb_000003_340 Hb_000120_610 Hb_000120_610 Hb_004136_040--Hb_000120_610 Hb_000264_100 Hb_000264_100 Hb_004136_040--Hb_000264_100 Hb_001504_190 Hb_001504_190 Hb_004136_040--Hb_001504_190 Hb_002827_020--Hb_000200_280 Hb_011716_090 Hb_011716_090 Hb_002827_020--Hb_011716_090 Hb_002827_020--Hb_000640_130 Hb_006586_030 Hb_006586_030 Hb_002827_020--Hb_006586_030 Hb_002827_020--Hb_001416_020 Hb_000215_100 Hb_000215_100 Hb_000640_130--Hb_000215_100 Hb_000640_130--Hb_001416_020 Hb_000640_130--Hb_000976_040 Hb_002005_090 Hb_002005_090 Hb_000640_130--Hb_002005_090 Hb_000640_130--Hb_011716_090 Hb_000640_130--Hb_000521_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10642 2.05962 0.360498 0.208565 0.920518 0.757532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.719368 0.290285 0.22117 2.60594 0.863053

CAGE analysis