Hb_000037_110

Information

Type -
Description -
Location Contig37: 227729-231025
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G125300g
description hypothetical protein
nr
ID XP_011026948.1
description PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
swissprot
ID Q9SIT5
description Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1
trembl
ID V7C8J7
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G125300g PE=4 SV=1
Gene Ontology
ID GO:0005770
description cation h(+) antiporter 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38017: 228642-231025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000037_110 0.0 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
2 Hb_000768_190 0.0717470913 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
3 Hb_000021_040 0.0833345199 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
4 Hb_008595_010 0.0914360766 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
5 Hb_022250_110 0.0930754944 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
6 Hb_000029_320 0.0933863679 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
7 Hb_002070_070 0.096905592 - - ATP binding protein, putative [Ricinus communis]
8 Hb_007943_100 0.0979574803 - - unnamed protein product [Coffea canephora]
9 Hb_000300_580 0.0986071546 - - PREDICTED: importin-5-like [Jatropha curcas]
10 Hb_000329_490 0.1000881937 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
11 Hb_002044_050 0.1008024615 - - -
12 Hb_000441_180 0.1041175959 - - Early endosome antigen, putative [Ricinus communis]
13 Hb_000261_520 0.108781548 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
14 Hb_064903_010 0.109568959 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
15 Hb_000365_140 0.1097326409 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
16 Hb_003847_120 0.1103394561 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_004218_240 0.1107602674 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
18 Hb_001473_090 0.1107875914 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
19 Hb_006882_010 0.1121271133 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
20 Hb_000209_070 0.1123650211 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000037_110 Hb_000037_110 Hb_000768_190 Hb_000768_190 Hb_000037_110--Hb_000768_190 Hb_000021_040 Hb_000021_040 Hb_000037_110--Hb_000021_040 Hb_008595_010 Hb_008595_010 Hb_000037_110--Hb_008595_010 Hb_022250_110 Hb_022250_110 Hb_000037_110--Hb_022250_110 Hb_000029_320 Hb_000029_320 Hb_000037_110--Hb_000029_320 Hb_002070_070 Hb_002070_070 Hb_000037_110--Hb_002070_070 Hb_064903_010 Hb_064903_010 Hb_000768_190--Hb_064903_010 Hb_003544_100 Hb_003544_100 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_000768_190--Hb_008595_010 Hb_006915_060 Hb_006915_060 Hb_000768_190--Hb_006915_060 Hb_000021_040--Hb_022250_110 Hb_000021_040--Hb_000768_190 Hb_000343_190 Hb_000343_190 Hb_000021_040--Hb_000343_190 Hb_000209_070 Hb_000209_070 Hb_000021_040--Hb_000209_070 Hb_001473_090 Hb_001473_090 Hb_000021_040--Hb_001473_090 Hb_001300_070 Hb_001300_070 Hb_008595_010--Hb_001300_070 Hb_000059_150 Hb_000059_150 Hb_008595_010--Hb_000059_150 Hb_002587_020 Hb_002587_020 Hb_008595_010--Hb_002587_020 Hb_010381_060 Hb_010381_060 Hb_008595_010--Hb_010381_060 Hb_000329_490 Hb_000329_490 Hb_022250_110--Hb_000329_490 Hb_022250_110--Hb_000209_070 Hb_022250_110--Hb_000029_320 Hb_078477_040 Hb_078477_040 Hb_022250_110--Hb_078477_040 Hb_003018_160 Hb_003018_160 Hb_022250_110--Hb_003018_160 Hb_006002_030 Hb_006002_030 Hb_022250_110--Hb_006002_030 Hb_000029_320--Hb_002070_070 Hb_015763_030 Hb_015763_030 Hb_000029_320--Hb_015763_030 Hb_000029_320--Hb_000209_070 Hb_000029_320--Hb_001473_090 Hb_000029_320--Hb_000329_490 Hb_002070_070--Hb_015763_030 Hb_002070_070--Hb_000329_490 Hb_002070_070--Hb_000209_070 Hb_001040_120 Hb_001040_120 Hb_002070_070--Hb_001040_120 Hb_004218_240 Hb_004218_240 Hb_002070_070--Hb_004218_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3638 13.1768 8.99502 14.4818 50.2469 37.0334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7712 5.51224 13.1901 11.2278 16.9228

CAGE analysis