Hb_000038_030

Information

Type -
Description -
Location Contig38: 21740-24913
Sequence    

Annotation

kegg
ID gmx:100811463
description probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like
nr
ID XP_003540002.1
description PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
swissprot
ID Q9LMI0
description Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1
trembl
ID I1LSH8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable -trehalose-phosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38540: 24630-24922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_030 0.0 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
2 Hb_002233_090 0.1681667573 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
3 Hb_011218_060 0.1759613451 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
4 Hb_000291_280 0.1923077361 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
5 Hb_001102_110 0.1970708226 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
6 Hb_000331_150 0.1972977332 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000431_020 0.1983330709 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
8 Hb_000208_290 0.1989377536 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
9 Hb_005227_070 0.2005905388 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_067188_010 0.2010189517 - - -
11 Hb_006029_020 0.2023669612 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1, partial [Vitis vinifera]
12 Hb_000395_140 0.2056485756 - - Oligopeptide transporter, putative [Ricinus communis]
13 Hb_022148_010 0.2057017609 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
14 Hb_000176_170 0.2057796269 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
15 Hb_006091_030 0.2144648775 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
16 Hb_003209_020 0.2158859584 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
17 Hb_006846_090 0.2166663698 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
18 Hb_019153_040 0.2181382009 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
19 Hb_034083_010 0.2207757857 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000103_360 0.224561086 - - -

Gene co-expression network

sample Hb_000038_030 Hb_000038_030 Hb_002233_090 Hb_002233_090 Hb_000038_030--Hb_002233_090 Hb_011218_060 Hb_011218_060 Hb_000038_030--Hb_011218_060 Hb_000291_280 Hb_000291_280 Hb_000038_030--Hb_000291_280 Hb_001102_110 Hb_001102_110 Hb_000038_030--Hb_001102_110 Hb_000331_150 Hb_000331_150 Hb_000038_030--Hb_000331_150 Hb_000431_020 Hb_000431_020 Hb_000038_030--Hb_000431_020 Hb_109168_010 Hb_109168_010 Hb_002233_090--Hb_109168_010 Hb_001959_050 Hb_001959_050 Hb_002233_090--Hb_001959_050 Hb_000395_140 Hb_000395_140 Hb_002233_090--Hb_000395_140 Hb_001040_170 Hb_001040_170 Hb_002233_090--Hb_001040_170 Hb_006091_030 Hb_006091_030 Hb_002233_090--Hb_006091_030 Hb_000926_120 Hb_000926_120 Hb_002233_090--Hb_000926_120 Hb_002391_230 Hb_002391_230 Hb_011218_060--Hb_002391_230 Hb_011218_060--Hb_000291_280 Hb_182424_010 Hb_182424_010 Hb_011218_060--Hb_182424_010 Hb_005227_070 Hb_005227_070 Hb_011218_060--Hb_005227_070 Hb_000622_310 Hb_000622_310 Hb_011218_060--Hb_000622_310 Hb_011909_040 Hb_011909_040 Hb_011218_060--Hb_011909_040 Hb_000291_280--Hb_005227_070 Hb_000427_030 Hb_000427_030 Hb_000291_280--Hb_000427_030 Hb_098993_010 Hb_098993_010 Hb_000291_280--Hb_098993_010 Hb_000088_040 Hb_000088_040 Hb_000291_280--Hb_000088_040 Hb_022148_010 Hb_022148_010 Hb_000291_280--Hb_022148_010 Hb_127003_010 Hb_127003_010 Hb_000291_280--Hb_127003_010 Hb_176022_020 Hb_176022_020 Hb_001102_110--Hb_176022_020 Hb_004156_060 Hb_004156_060 Hb_001102_110--Hb_004156_060 Hb_012055_020 Hb_012055_020 Hb_001102_110--Hb_012055_020 Hb_004884_060 Hb_004884_060 Hb_001102_110--Hb_004884_060 Hb_003656_030 Hb_003656_030 Hb_001102_110--Hb_003656_030 Hb_040996_010 Hb_040996_010 Hb_001102_110--Hb_040996_010 Hb_000331_150--Hb_000291_280 Hb_003069_020 Hb_003069_020 Hb_000331_150--Hb_003069_020 Hb_000397_070 Hb_000397_070 Hb_000331_150--Hb_000397_070 Hb_000331_150--Hb_011218_060 Hb_067188_010 Hb_067188_010 Hb_000331_150--Hb_067188_010 Hb_000176_170 Hb_000176_170 Hb_000431_020--Hb_000176_170 Hb_003768_040 Hb_003768_040 Hb_000431_020--Hb_003768_040 Hb_000832_200 Hb_000832_200 Hb_000431_020--Hb_000832_200 Hb_099864_010 Hb_099864_010 Hb_000431_020--Hb_099864_010 Hb_000406_040 Hb_000406_040 Hb_000431_020--Hb_000406_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.99176 0.540159 0.302079 0.0842082 7.44603 4.63443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05049 0.529564 6.0162 2.19932 0.109983

CAGE analysis