Hb_000038_070

Information

Type -
Description -
Location Contig38: 53659-57354
Sequence    

Annotation

kegg
ID rcu:RCOM_0324250
description hypothetical protein
nr
ID XP_002530206.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4IDQ5
description Protein JASON OS=Arabidopsis thaliana GN=JASON PE=2 SV=1
trembl
ID B9SW37
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0324250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38543: 53667-57420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011849_010 0.0591354999 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
3 Hb_000085_360 0.063586301 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
4 Hb_000856_390 0.0660920801 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002374_090 0.0725541835 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
6 Hb_181744_010 0.0741896313 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
7 Hb_003106_090 0.0780285113 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
8 Hb_000614_200 0.0799401676 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
9 Hb_001279_110 0.0802857277 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
10 Hb_007245_030 0.0824469147 - - conserved hypothetical protein [Ricinus communis]
11 Hb_119044_040 0.0867315382 - - cyclin B, putative [Ricinus communis]
12 Hb_000316_070 0.0875065396 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
13 Hb_001307_150 0.08759986 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_004225_160 0.0881167605 - - PREDICTED: kiwellin-like [Jatropha curcas]
15 Hb_001998_180 0.0906020456 - - actin binding protein, putative [Ricinus communis]
16 Hb_004635_020 0.0915333775 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
17 Hb_005276_090 0.0915494067 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
18 Hb_000116_050 0.0936142228 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
19 Hb_000480_060 0.0937883786 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
20 Hb_003776_050 0.0938973309 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]

Gene co-expression network

sample Hb_000038_070 Hb_000038_070 Hb_011849_010 Hb_011849_010 Hb_000038_070--Hb_011849_010 Hb_000085_360 Hb_000085_360 Hb_000038_070--Hb_000085_360 Hb_000856_390 Hb_000856_390 Hb_000038_070--Hb_000856_390 Hb_002374_090 Hb_002374_090 Hb_000038_070--Hb_002374_090 Hb_181744_010 Hb_181744_010 Hb_000038_070--Hb_181744_010 Hb_003106_090 Hb_003106_090 Hb_000038_070--Hb_003106_090 Hb_000614_200 Hb_000614_200 Hb_011849_010--Hb_000614_200 Hb_003776_050 Hb_003776_050 Hb_011849_010--Hb_003776_050 Hb_011849_010--Hb_002374_090 Hb_119044_040 Hb_119044_040 Hb_011849_010--Hb_119044_040 Hb_000316_070 Hb_000316_070 Hb_011849_010--Hb_000316_070 Hb_000085_360--Hb_119044_040 Hb_004631_040 Hb_004631_040 Hb_000085_360--Hb_004631_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_001279_110 Hb_001279_110 Hb_000085_360--Hb_001279_110 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060 Hb_001307_150 Hb_001307_150 Hb_000856_390--Hb_001307_150 Hb_016898_020 Hb_016898_020 Hb_000856_390--Hb_016898_020 Hb_007245_030 Hb_007245_030 Hb_000856_390--Hb_007245_030 Hb_000480_060 Hb_000480_060 Hb_000856_390--Hb_000480_060 Hb_000856_390--Hb_000085_360 Hb_002374_090--Hb_000614_200 Hb_002374_090--Hb_119044_040 Hb_002374_090--Hb_003776_050 Hb_002374_090--Hb_000316_070 Hb_000340_550 Hb_000340_550 Hb_181744_010--Hb_000340_550 Hb_181744_010--Hb_001279_110 Hb_005116_120 Hb_005116_120 Hb_181744_010--Hb_005116_120 Hb_003777_260 Hb_003777_260 Hb_181744_010--Hb_003777_260 Hb_000060_030 Hb_000060_030 Hb_181744_010--Hb_000060_030 Hb_003106_090--Hb_005276_090 Hb_003106_090--Hb_000085_360 Hb_005542_150 Hb_005542_150 Hb_003106_090--Hb_005542_150 Hb_000317_120 Hb_000317_120 Hb_003106_090--Hb_000317_120 Hb_003106_090--Hb_000856_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0395922 0.485133 10.1929 4.82363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0218678 0 0.950188 0.688984

CAGE analysis