Hb_000038_080

Information

Type -
Description -
Location Contig38: 59650-60929
Sequence    

Annotation

kegg
ID rcu:RCOM_0324140
description glutathione-s-transferase theta, gst, putative (EC:2.5.1.18)
nr
ID XP_012092523.1
description PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
swissprot
ID O80852
description Glutathione S-transferase F9 OS=Arabidopsis thaliana GN=GSTF9 PE=1 SV=1
trembl
ID A0A067JM15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04912 PE=3 SV=1
Gene Ontology
ID GO:0005515
description glutathione s-transferase f9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38546: 59680-60921
cDNA
(Sanger)
(ID:Location)		 014_G04.ab1: 59762-60706 , 023_L09.ab1: 59762-60697 , 030_O20.ab1: 59762-60752 , 034_K04.ab1: 59762-60745 , 040_G21.ab1: 59762-60718 , 045_C19.ab1: 59762-60764 , 052_K05.ab1: 59762-60737 , 052_N20.ab1: 59762-60725

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_080 0.0 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
2 Hb_000236_310 0.0911701681 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
3 Hb_005731_120 0.0952008267 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
4 Hb_000785_080 0.0977760647 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
5 Hb_004934_070 0.1010884236 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
6 Hb_000031_220 0.1030469681 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
7 Hb_099878_030 0.1043998296 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
8 Hb_000862_030 0.1044272184 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]
9 Hb_162603_010 0.104492484 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_002235_170 0.1054382294 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
11 Hb_000193_270 0.1063677233 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
12 Hb_004545_090 0.1100995081 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000521_270 0.1110494555 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
14 Hb_002784_060 0.1112129188 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
15 Hb_006114_030 0.1115804057 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
16 Hb_018292_010 0.1118459734 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
17 Hb_004689_050 0.1123435657 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000260_170 0.1127663633 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
19 Hb_000640_120 0.1130954556 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
20 Hb_000271_090 0.1134904706 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000038_080 Hb_000038_080 Hb_000236_310 Hb_000236_310 Hb_000038_080--Hb_000236_310 Hb_005731_120 Hb_005731_120 Hb_000038_080--Hb_005731_120 Hb_000785_080 Hb_000785_080 Hb_000038_080--Hb_000785_080 Hb_004934_070 Hb_004934_070 Hb_000038_080--Hb_004934_070 Hb_000031_220 Hb_000031_220 Hb_000038_080--Hb_000031_220 Hb_099878_030 Hb_099878_030 Hb_000038_080--Hb_099878_030 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_011716_020 Hb_011716_020 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_002600_140 Hb_002600_140 Hb_000236_310--Hb_002600_140 Hb_144528_010 Hb_144528_010 Hb_005731_120--Hb_144528_010 Hb_002235_170 Hb_002235_170 Hb_005731_120--Hb_002235_170 Hb_005291_030 Hb_005291_030 Hb_005731_120--Hb_005291_030 Hb_005914_080 Hb_005914_080 Hb_005731_120--Hb_005914_080 Hb_005731_120--Hb_000031_220 Hb_020665_040 Hb_020665_040 Hb_005731_120--Hb_020665_040 Hb_003641_060 Hb_003641_060 Hb_000785_080--Hb_003641_060 Hb_000785_080--Hb_004934_070 Hb_000083_160 Hb_000083_160 Hb_000785_080--Hb_000083_160 Hb_003010_020 Hb_003010_020 Hb_000785_080--Hb_003010_020 Hb_004881_020 Hb_004881_020 Hb_000785_080--Hb_004881_020 Hb_005862_010 Hb_005862_010 Hb_004934_070--Hb_005862_010 Hb_002374_020 Hb_002374_020 Hb_004934_070--Hb_002374_020 Hb_004934_070--Hb_003641_060 Hb_004934_070--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_004934_070--Hb_144598_030 Hb_002982_040 Hb_002982_040 Hb_000031_220--Hb_002982_040 Hb_002027_270 Hb_002027_270 Hb_000031_220--Hb_002027_270 Hb_002054_040 Hb_002054_040 Hb_000031_220--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_000031_220--Hb_000260_220 Hb_000003_480 Hb_000003_480 Hb_000031_220--Hb_000003_480 Hb_002784_060 Hb_002784_060 Hb_000031_220--Hb_002784_060 Hb_003940_040 Hb_003940_040 Hb_099878_030--Hb_003940_040 Hb_000140_280 Hb_000140_280 Hb_099878_030--Hb_000140_280 Hb_000159_090 Hb_000159_090 Hb_099878_030--Hb_000159_090 Hb_000429_150 Hb_000429_150 Hb_099878_030--Hb_000429_150 Hb_007638_030 Hb_007638_030 Hb_099878_030--Hb_007638_030 Hb_162603_010 Hb_162603_010 Hb_099878_030--Hb_162603_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
880.7 520.959 317.717 940.423 694.988 1913.1
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1162.26 622.367 477.057 1149.84 857.397

CAGE analysis