Hb_000038_130

Information

Type -
Description -
Location Contig38: 123703-126868
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38549: 123802-123953 , PASA_asmbl_38551: 124143-124410 , PASA_asmbl_38552: 124488-192219 , PASA_asmbl_38554: 125943-126462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_130 0.0 - - -
2 Hb_000714_020 0.103760961 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
3 Hb_001635_220 0.1098523946 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
4 Hb_000117_040 0.1111570637 - - 30S ribosomal protein S6A [Hevea brasiliensis]
5 Hb_002078_430 0.1138517826 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
6 Hb_000590_090 0.1144023244 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_004374_010 0.1173261125 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
8 Hb_000692_260 0.117533596 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
9 Hb_002942_070 0.1195056327 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
10 Hb_001454_390 0.120220536 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
11 Hb_000977_140 0.1202830468 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
12 Hb_000926_270 0.1208210343 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
13 Hb_001623_370 0.1212062381 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000062_230 0.1215031024 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
15 Hb_001776_080 0.1217981747 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
16 Hb_007992_030 0.1220080704 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
17 Hb_001514_020 0.1222498435 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
18 Hb_004813_010 0.1223302664 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_002783_230 0.1227121476 - - neutral/alkaline invertase [Manihot esculenta]
20 Hb_000847_070 0.1248033883 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]

Gene co-expression network

sample Hb_000038_130 Hb_000038_130 Hb_000714_020 Hb_000714_020 Hb_000038_130--Hb_000714_020 Hb_001635_220 Hb_001635_220 Hb_000038_130--Hb_001635_220 Hb_000117_040 Hb_000117_040 Hb_000038_130--Hb_000117_040 Hb_002078_430 Hb_002078_430 Hb_000038_130--Hb_002078_430 Hb_000590_090 Hb_000590_090 Hb_000038_130--Hb_000590_090 Hb_004374_010 Hb_004374_010 Hb_000038_130--Hb_004374_010 Hb_011609_030 Hb_011609_030 Hb_000714_020--Hb_011609_030 Hb_001623_370 Hb_001623_370 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_000714_020--Hb_004374_010 Hb_003913_100 Hb_003913_100 Hb_001635_220--Hb_003913_100 Hb_000483_370 Hb_000483_370 Hb_001635_220--Hb_000483_370 Hb_000172_530 Hb_000172_530 Hb_001635_220--Hb_000172_530 Hb_004254_040 Hb_004254_040 Hb_001635_220--Hb_004254_040 Hb_000603_200 Hb_000603_200 Hb_001635_220--Hb_000603_200 Hb_011609_190 Hb_011609_190 Hb_000117_040--Hb_011609_190 Hb_000163_290 Hb_000163_290 Hb_000117_040--Hb_000163_290 Hb_026048_090 Hb_026048_090 Hb_000117_040--Hb_026048_090 Hb_000371_110 Hb_000371_110 Hb_000117_040--Hb_000371_110 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000179_250 Hb_000179_250 Hb_000117_040--Hb_000179_250 Hb_002078_430--Hb_000714_020 Hb_002078_430--Hb_011609_030 Hb_004232_010 Hb_004232_010 Hb_002078_430--Hb_004232_010 Hb_005741_020 Hb_005741_020 Hb_002078_430--Hb_005741_020 Hb_003636_090 Hb_003636_090 Hb_002078_430--Hb_003636_090 Hb_005389_140 Hb_005389_140 Hb_000590_090--Hb_005389_140 Hb_001386_130 Hb_001386_130 Hb_000590_090--Hb_001386_130 Hb_000680_150 Hb_000680_150 Hb_000590_090--Hb_000680_150 Hb_000590_090--Hb_000714_020 Hb_001454_390 Hb_001454_390 Hb_000590_090--Hb_001454_390 Hb_005714_040 Hb_005714_040 Hb_000590_090--Hb_005714_040 Hb_001956_120 Hb_001956_120 Hb_004374_010--Hb_001956_120 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_000062_230 Hb_000062_230 Hb_004374_010--Hb_000062_230 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_002044_090 Hb_002044_090 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
187.921 19.8015 8.1314 8.18194 137.254 115.696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.9763 86.2631 34.3815 12.8397 2.28863

CAGE analysis