Hb_000038_160

Information

Type -
Description -
Location Contig38: 208931-213576
Sequence    

Annotation

kegg
ID bvg:104905624
description uncharacterized LOC104905624
nr
ID AJE29370.1
description putative gag protein [Coffea canephora]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A0B5CXC3
description Putative gag protein OS=Coffea canephora PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_160 0.0 - - putative gag protein [Coffea canephora]
2 Hb_140049_070 0.0010468912 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002805_320 0.0050542015 - - -
4 Hb_002163_060 0.0173981995 - - -
5 Hb_005867_010 0.0382649708 - - -
6 Hb_001364_020 0.0470688647 - - -
7 Hb_027393_020 0.0966042744 - - -
8 Hb_004324_380 0.1085083932 - - -
9 Hb_000375_380 0.1119661581 - - -
10 Hb_011978_010 0.1123237117 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
11 Hb_000100_050 0.113059041 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_007008_020 0.1379852512 - - -
13 Hb_046727_010 0.15826326 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_080765_020 0.1614230336 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_000098_280 0.1755006027 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
16 Hb_000008_050 0.176936901 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
17 Hb_000953_150 0.1820802296 - - -
18 Hb_000739_090 0.2098598792 - - -
19 Hb_052761_010 0.2193386096 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
20 Hb_000362_240 0.2280305168 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000038_160 Hb_000038_160 Hb_140049_070 Hb_140049_070 Hb_000038_160--Hb_140049_070 Hb_002805_320 Hb_002805_320 Hb_000038_160--Hb_002805_320 Hb_002163_060 Hb_002163_060 Hb_000038_160--Hb_002163_060 Hb_005867_010 Hb_005867_010 Hb_000038_160--Hb_005867_010 Hb_001364_020 Hb_001364_020 Hb_000038_160--Hb_001364_020 Hb_027393_020 Hb_027393_020 Hb_000038_160--Hb_027393_020 Hb_140049_070--Hb_002805_320 Hb_140049_070--Hb_002163_060 Hb_140049_070--Hb_005867_010 Hb_140049_070--Hb_001364_020 Hb_140049_070--Hb_027393_020 Hb_002805_320--Hb_002163_060 Hb_002805_320--Hb_005867_010 Hb_002805_320--Hb_001364_020 Hb_002805_320--Hb_027393_020 Hb_002163_060--Hb_005867_010 Hb_002163_060--Hb_001364_020 Hb_002163_060--Hb_027393_020 Hb_005867_010--Hb_001364_020 Hb_005867_010--Hb_027393_020 Hb_001364_020--Hb_027393_020 Hb_004324_380 Hb_004324_380 Hb_027393_020--Hb_004324_380 Hb_000375_380 Hb_000375_380 Hb_027393_020--Hb_000375_380 Hb_011978_010 Hb_011978_010 Hb_027393_020--Hb_011978_010 Hb_000100_050 Hb_000100_050 Hb_027393_020--Hb_000100_050 Hb_007008_020 Hb_007008_020 Hb_027393_020--Hb_007008_020 Hb_046727_010 Hb_046727_010 Hb_027393_020--Hb_046727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0632126 0 0 0 0.101265 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis