Hb_000038_170

Information

Type -
Description -
Location Contig38: 214032-233754
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10610g
description hypothetical protein
nr
ID XP_012076860.1
description PREDICTED: SCY1-like protein 2 [Jatropha curcas]
swissprot
ID Q6P3W7
description SCY1-like protein 2 OS=Homo sapiens GN=SCYL2 PE=1 SV=1
trembl
ID A0A067LAT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17193 PE=4 SV=1
Gene Ontology
ID GO:0004672
description scy1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38555: 214431-214548 , PASA_asmbl_38558: 216939-217055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_170 0.0 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
2 Hb_002518_280 0.0498404433 - - phosphate transporter [Manihot esculenta]
3 Hb_011671_430 0.0521710841 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
4 Hb_001595_030 0.0573721528 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
5 Hb_003428_030 0.0592678657 - - tRNA, putative [Ricinus communis]
6 Hb_000879_200 0.0597132652 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
7 Hb_001006_140 0.0606806161 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
8 Hb_033720_010 0.062697694 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
9 Hb_007691_030 0.0633333211 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
10 Hb_001258_090 0.0633771553 - - PREDICTED: protein spt2-like [Jatropha curcas]
11 Hb_000853_230 0.0649880886 - - syntaxin, putative [Ricinus communis]
12 Hb_001390_110 0.0659619455 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
13 Hb_167498_010 0.0663013901 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
14 Hb_000030_190 0.066323243 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
15 Hb_000096_070 0.0665844864 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
16 Hb_005276_210 0.0666288726 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
17 Hb_003158_010 0.0668640402 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
18 Hb_003952_070 0.0669101765 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_023386_020 0.0671244384 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
20 Hb_001409_020 0.0675150078 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]

Gene co-expression network

sample Hb_000038_170 Hb_000038_170 Hb_002518_280 Hb_002518_280 Hb_000038_170--Hb_002518_280 Hb_011671_430 Hb_011671_430 Hb_000038_170--Hb_011671_430 Hb_001595_030 Hb_001595_030 Hb_000038_170--Hb_001595_030 Hb_003428_030 Hb_003428_030 Hb_000038_170--Hb_003428_030 Hb_000879_200 Hb_000879_200 Hb_000038_170--Hb_000879_200 Hb_001006_140 Hb_001006_140 Hb_000038_170--Hb_001006_140 Hb_023386_020 Hb_023386_020 Hb_002518_280--Hb_023386_020 Hb_010618_010 Hb_010618_010 Hb_002518_280--Hb_010618_010 Hb_000152_380 Hb_000152_380 Hb_002518_280--Hb_000152_380 Hb_002518_280--Hb_000879_200 Hb_004310_150 Hb_004310_150 Hb_002518_280--Hb_004310_150 Hb_004577_020 Hb_004577_020 Hb_011671_430--Hb_004577_020 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_001595_030--Hb_000879_200 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_000327_120 Hb_000327_120 Hb_001595_030--Hb_000327_120 Hb_002603_120 Hb_002603_120 Hb_001595_030--Hb_002603_120 Hb_006185_050 Hb_006185_050 Hb_001595_030--Hb_006185_050 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270 Hb_001926_030 Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_006620_020 Hb_006620_020 Hb_000879_200--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_000879_200--Hb_000853_230 Hb_000879_200--Hb_023386_020 Hb_000051_070 Hb_000051_070 Hb_001006_140--Hb_000051_070 Hb_001199_020 Hb_001199_020 Hb_001006_140--Hb_001199_020 Hb_000120_790 Hb_000120_790 Hb_001006_140--Hb_000120_790 Hb_003952_070 Hb_003952_070 Hb_001006_140--Hb_003952_070 Hb_001006_140--Hb_002518_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.16332 7.29536 5.45362 5.55449 9.85077 9.35665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.76715 9.02336 6.74773 5.80222 5.28004

CAGE analysis