Hb_000039_080

Information

Type -
Description -
Location Contig39: 124504-126020
Sequence    

Annotation

kegg
ID rcu:RCOM_1096490
description cyclin d, putative
nr
ID XP_002524706.1
description cyclin d, putative [Ricinus communis]
swissprot
ID Q9ZR04
description Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=3 SV=1
trembl
ID B9SFD7
description Cyclin d, putative OS=Ricinus communis GN=RCOM_1096490 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-d6-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_080 0.0 - - cyclin d, putative [Ricinus communis]
2 Hb_000483_120 0.126745386 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
3 Hb_012016_050 0.1288643349 - - hypothetical protein JCGZ_09036 [Jatropha curcas]
4 Hb_179367_020 0.1308718187 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_000908_030 0.1334665952 - - small heat-shock protein, putative [Ricinus communis]
6 Hb_177179_020 0.1367420218 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011826_010 0.1368406624 - - Disease resistance protein RPM1, putative [Ricinus communis]
8 Hb_019733_020 0.137149342 - - hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
9 Hb_000270_050 0.1396793046 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
10 Hb_001976_070 0.1417086695 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
11 Hb_132880_020 0.1467257449 - - hypothetical protein VITISV_026364 [Vitis vinifera]
12 Hb_001152_040 0.1489956158 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
13 Hb_004732_070 0.1499060602 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003489_010 0.1499885097 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
15 Hb_000025_800 0.1523371784 - - hypothetical protein VITISV_020143 [Vitis vinifera]
16 Hb_036602_010 0.1559581207 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
17 Hb_119583_030 0.1569199729 - - unnamed protein product [Vitis vinifera]
18 Hb_001488_120 0.161890475 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
19 Hb_000009_100 0.1620957477 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
20 Hb_057721_010 0.1651120526 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_000039_080 Hb_000039_080 Hb_000483_120 Hb_000483_120 Hb_000039_080--Hb_000483_120 Hb_012016_050 Hb_012016_050 Hb_000039_080--Hb_012016_050 Hb_179367_020 Hb_179367_020 Hb_000039_080--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_000039_080--Hb_000908_030 Hb_177179_020 Hb_177179_020 Hb_000039_080--Hb_177179_020 Hb_011826_010 Hb_011826_010 Hb_000039_080--Hb_011826_010 Hb_000483_120--Hb_177179_020 Hb_057721_010 Hb_057721_010 Hb_000483_120--Hb_057721_010 Hb_119583_030 Hb_119583_030 Hb_000483_120--Hb_119583_030 Hb_000025_800 Hb_000025_800 Hb_000483_120--Hb_000025_800 Hb_000483_120--Hb_179367_020 Hb_003489_010 Hb_003489_010 Hb_000483_120--Hb_003489_010 Hb_128392_010 Hb_128392_010 Hb_012016_050--Hb_128392_010 Hb_005701_100 Hb_005701_100 Hb_012016_050--Hb_005701_100 Hb_000700_020 Hb_000700_020 Hb_012016_050--Hb_000700_020 Hb_001205_290 Hb_001205_290 Hb_012016_050--Hb_001205_290 Hb_001247_060 Hb_001247_060 Hb_012016_050--Hb_001247_060 Hb_179367_020--Hb_000908_030 Hb_001976_070 Hb_001976_070 Hb_179367_020--Hb_001976_070 Hb_179367_020--Hb_177179_020 Hb_132880_020 Hb_132880_020 Hb_179367_020--Hb_132880_020 Hb_179367_020--Hb_000025_800 Hb_000908_030--Hb_001976_070 Hb_003878_130 Hb_003878_130 Hb_000908_030--Hb_003878_130 Hb_000908_030--Hb_177179_020 Hb_000908_030--Hb_000025_800 Hb_000908_030--Hb_132880_020 Hb_177179_020--Hb_057721_010 Hb_177179_020--Hb_119583_030 Hb_177179_020--Hb_000025_800 Hb_011826_010--Hb_000483_120 Hb_011826_010--Hb_119583_030 Hb_011826_010--Hb_057721_010 Hb_011826_010--Hb_000025_800 Hb_002163_070 Hb_002163_070 Hb_011826_010--Hb_002163_070 Hb_010252_010 Hb_010252_010 Hb_011826_010--Hb_010252_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0427303 0.178269 0.819711 1.35538 0.0214311 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0154594 0

CAGE analysis