Hb_000039_100

Information

Type -
Description -
Location Contig39: 145819-147339
Sequence    

Annotation

kegg
ID rcu:RCOM_1096480
description ATP binding protein, putative
nr
ID XP_012091468.1
description PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21338 PE=4 SV=1
Gene Ontology
ID GO:0005515
description octicosapeptide phox bem1p family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39051: 145882-146326 , PASA_asmbl_39052: 146336-146929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_100 0.0 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
2 Hb_011054_030 0.0857799082 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
3 Hb_000172_300 0.0919805277 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
4 Hb_001274_040 0.0973632293 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
5 Hb_048653_040 0.1004829759 - - ankyrin repeat family protein [Populus trichocarpa]
6 Hb_001437_200 0.1130552151 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
7 Hb_005081_060 0.1188856457 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
8 Hb_011925_010 0.1246420492 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
9 Hb_116349_050 0.1247127739 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
10 Hb_008707_020 0.1272619665 - - ATP binding protein, putative [Ricinus communis]
11 Hb_055706_010 0.1286497001 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
12 Hb_007371_020 0.12918471 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
13 Hb_021596_070 0.1300411442 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
14 Hb_008667_020 0.1302881831 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
15 Hb_010962_030 0.1302920582 - - kinase, putative [Ricinus communis]
16 Hb_000414_100 0.1326059957 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
17 Hb_001376_020 0.1342531935 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
18 Hb_029866_140 0.1347668257 - - PREDICTED: hevamine-A [Jatropha curcas]
19 Hb_000318_460 0.1350574943 - - hypothetical protein CICLE_v10028333mg [Citrus clementina]
20 Hb_041290_030 0.1369349711 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]

Gene co-expression network

sample Hb_000039_100 Hb_000039_100 Hb_011054_030 Hb_011054_030 Hb_000039_100--Hb_011054_030 Hb_000172_300 Hb_000172_300 Hb_000039_100--Hb_000172_300 Hb_001274_040 Hb_001274_040 Hb_000039_100--Hb_001274_040 Hb_048653_040 Hb_048653_040 Hb_000039_100--Hb_048653_040 Hb_001437_200 Hb_001437_200 Hb_000039_100--Hb_001437_200 Hb_005081_060 Hb_005081_060 Hb_000039_100--Hb_005081_060 Hb_005054_300 Hb_005054_300 Hb_011054_030--Hb_005054_300 Hb_021596_070 Hb_021596_070 Hb_011054_030--Hb_021596_070 Hb_111985_060 Hb_111985_060 Hb_011054_030--Hb_111985_060 Hb_008667_020 Hb_008667_020 Hb_011054_030--Hb_008667_020 Hb_029866_140 Hb_029866_140 Hb_011054_030--Hb_029866_140 Hb_116349_050 Hb_116349_050 Hb_000172_300--Hb_116349_050 Hb_000172_300--Hb_048653_040 Hb_000172_300--Hb_011054_030 Hb_174829_040 Hb_174829_040 Hb_000172_300--Hb_174829_040 Hb_012702_010 Hb_012702_010 Hb_000172_300--Hb_012702_010 Hb_000111_130 Hb_000111_130 Hb_001274_040--Hb_000111_130 Hb_002890_060 Hb_002890_060 Hb_001274_040--Hb_002890_060 Hb_000767_040 Hb_000767_040 Hb_001274_040--Hb_000767_040 Hb_000318_460 Hb_000318_460 Hb_001274_040--Hb_000318_460 Hb_008707_020 Hb_008707_020 Hb_001274_040--Hb_008707_020 Hb_048653_040--Hb_011054_030 Hb_048653_040--Hb_001437_200 Hb_055706_010 Hb_055706_010 Hb_048653_040--Hb_055706_010 Hb_048653_040--Hb_116349_050 Hb_004161_010 Hb_004161_010 Hb_001437_200--Hb_004161_010 Hb_027913_010 Hb_027913_010 Hb_001437_200--Hb_027913_010 Hb_004656_030 Hb_004656_030 Hb_001437_200--Hb_004656_030 Hb_003847_140 Hb_003847_140 Hb_001437_200--Hb_003847_140 Hb_001437_200--Hb_005081_060 Hb_005081_060--Hb_003847_140 Hb_039650_010 Hb_039650_010 Hb_005081_060--Hb_039650_010 Hb_000656_360 Hb_000656_360 Hb_005081_060--Hb_000656_360 Hb_005081_060--Hb_001274_040 Hb_005081_060--Hb_008707_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.97581 236.036 12.1721 16.5344 0.154366 0.580101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.98686 0.646975 0.728028 21.5722 9.34813

CAGE analysis