Hb_000039_150

Information

Type -
Description -
Location Contig39: 189838-193906
Sequence    

Annotation

kegg
ID rcu:RCOM_1096430
description hypothetical protein
nr
ID XP_012091471.1
description PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID A0A067JLI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21341 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lysine-specific demethylase jmj25 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39055: 189717-190518
cDNA
(Sanger)
(ID:Location)		 001_I03.ab1: 189717-190247 , 034_D14.ab1: 189717-190247

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_150 0.0 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
2 Hb_008959_010 0.0395516831 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011228_010 0.0614168986 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002769_030 0.0644969226 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
5 Hb_006501_090 0.0668150616 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
6 Hb_007426_110 0.0688867957 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
7 Hb_007765_100 0.0700219535 - - PREDICTED: helicase SKI2W [Jatropha curcas]
8 Hb_002055_040 0.071333119 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
9 Hb_001498_010 0.0717703844 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
10 Hb_006483_110 0.073248113 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
11 Hb_001279_030 0.073662827 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
12 Hb_002263_020 0.0746395382 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_002027_080 0.0750617984 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
14 Hb_002218_090 0.0754858341 - - Poly(rC)-binding protein, putative [Ricinus communis]
15 Hb_000441_220 0.0767736676 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001157_240 0.0776671647 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
17 Hb_001655_030 0.0783804583 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
18 Hb_012539_060 0.0804400936 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
19 Hb_004108_160 0.0810053785 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
20 Hb_001348_080 0.081446242 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000039_150 Hb_000039_150 Hb_008959_010 Hb_008959_010 Hb_000039_150--Hb_008959_010 Hb_011228_010 Hb_011228_010 Hb_000039_150--Hb_011228_010 Hb_002769_030 Hb_002769_030 Hb_000039_150--Hb_002769_030 Hb_006501_090 Hb_006501_090 Hb_000039_150--Hb_006501_090 Hb_007426_110 Hb_007426_110 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100 Hb_004108_160 Hb_004108_160 Hb_008959_010--Hb_004108_160 Hb_002263_020 Hb_002263_020 Hb_008959_010--Hb_002263_020 Hb_008959_010--Hb_002769_030 Hb_001304_110 Hb_001304_110 Hb_008959_010--Hb_001304_110 Hb_008959_010--Hb_011228_010 Hb_001279_030 Hb_001279_030 Hb_011228_010--Hb_001279_030 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_002055_040 Hb_002055_040 Hb_011228_010--Hb_002055_040 Hb_003153_010 Hb_003153_010 Hb_002769_030--Hb_003153_010 Hb_001163_060 Hb_001163_060 Hb_002769_030--Hb_001163_060 Hb_001629_030 Hb_001629_030 Hb_002769_030--Hb_001629_030 Hb_002769_030--Hb_004108_160 Hb_001655_030 Hb_001655_030 Hb_006501_090--Hb_001655_030 Hb_000035_170 Hb_000035_170 Hb_006501_090--Hb_000035_170 Hb_109980_010 Hb_109980_010 Hb_006501_090--Hb_109980_010 Hb_001518_080 Hb_001518_080 Hb_006501_090--Hb_001518_080 Hb_006501_090--Hb_001279_030 Hb_006483_110 Hb_006483_110 Hb_007426_110--Hb_006483_110 Hb_028960_020 Hb_028960_020 Hb_007426_110--Hb_028960_020 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002218_090 Hb_002218_090 Hb_007426_110--Hb_002218_090 Hb_007426_110--Hb_002263_020 Hb_007426_110--Hb_001655_030 Hb_000665_120 Hb_000665_120 Hb_007765_100--Hb_000665_120 Hb_008059_010 Hb_008059_010 Hb_007765_100--Hb_008059_010 Hb_170416_010 Hb_170416_010 Hb_007765_100--Hb_170416_010 Hb_007765_100--Hb_002218_090 Hb_000363_310 Hb_000363_310 Hb_007765_100--Hb_000363_310 Hb_001226_150 Hb_001226_150 Hb_007765_100--Hb_001226_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02718 2.92623 4.013 3.09476 3.2668 3.71361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33601 2.34085 4.51121 3.62158 5.46181

CAGE analysis