Hb_000039_210

Information

Type -
Description -
Location Contig39: 243750-244833
Sequence    

Annotation

kegg
ID rcu:RCOM_1096260
description hypothetical protein
nr
ID XP_012091480.1
description PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SFC4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1096260 PE=4 SV=1
Gene Ontology
ID GO:0009570
description PREDICTED: uncharacterized protein LOC105649449

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39064: 243995-244552 , PASA_asmbl_39065: 244556-244758
cDNA
(Sanger)
(ID:Location)		 012_L16.ab1: 243997-244552

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_210 0.0 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
2 Hb_005000_120 0.0539339661 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
3 Hb_001287_070 0.0579747589 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
4 Hb_006901_020 0.0590010034 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
5 Hb_001046_060 0.0649236262 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
6 Hb_011068_010 0.0671174486 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
7 Hb_000111_460 0.0673918755 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
8 Hb_000010_380 0.0733435404 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
9 Hb_000450_050 0.074276485 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
10 Hb_003090_050 0.076259548 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
11 Hb_000805_080 0.0775026967 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
12 Hb_008748_050 0.0782072419 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
13 Hb_005605_020 0.07964482 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
14 Hb_003337_080 0.0813583788 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
15 Hb_001621_090 0.081429506 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
16 Hb_000841_040 0.088233246 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
17 Hb_011344_030 0.0883201264 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
18 Hb_000923_030 0.0891842559 - - F-box family protein [Populus trichocarpa]
19 Hb_107748_010 0.0913647243 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
20 Hb_001832_180 0.0928481398 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]

Gene co-expression network

sample Hb_000039_210 Hb_000039_210 Hb_005000_120 Hb_005000_120 Hb_000039_210--Hb_005000_120 Hb_001287_070 Hb_001287_070 Hb_000039_210--Hb_001287_070 Hb_006901_020 Hb_006901_020 Hb_000039_210--Hb_006901_020 Hb_001046_060 Hb_001046_060 Hb_000039_210--Hb_001046_060 Hb_011068_010 Hb_011068_010 Hb_000039_210--Hb_011068_010 Hb_000111_460 Hb_000111_460 Hb_000039_210--Hb_000111_460 Hb_005000_120--Hb_001046_060 Hb_005000_120--Hb_001287_070 Hb_001621_090 Hb_001621_090 Hb_005000_120--Hb_001621_090 Hb_005000_120--Hb_011068_010 Hb_005000_120--Hb_000111_460 Hb_001287_070--Hb_011068_010 Hb_001287_070--Hb_001046_060 Hb_003090_050 Hb_003090_050 Hb_001287_070--Hb_003090_050 Hb_000805_080 Hb_000805_080 Hb_001287_070--Hb_000805_080 Hb_000010_380 Hb_000010_380 Hb_001287_070--Hb_000010_380 Hb_025325_010 Hb_025325_010 Hb_006901_020--Hb_025325_010 Hb_006901_020--Hb_005000_120 Hb_006901_020--Hb_011068_010 Hb_003337_080 Hb_003337_080 Hb_006901_020--Hb_003337_080 Hb_006901_020--Hb_001287_070 Hb_005605_020 Hb_005605_020 Hb_001046_060--Hb_005605_020 Hb_001046_060--Hb_000805_080 Hb_001046_060--Hb_011068_010 Hb_107748_010 Hb_107748_010 Hb_001046_060--Hb_107748_010 Hb_001046_060--Hb_003337_080 Hb_011068_010--Hb_003337_080 Hb_011068_010--Hb_005605_020 Hb_011068_010--Hb_000805_080 Hb_000111_460--Hb_003090_050 Hb_008748_050 Hb_008748_050 Hb_000111_460--Hb_008748_050 Hb_000111_460--Hb_001287_070 Hb_000841_040 Hb_000841_040 Hb_000111_460--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_000111_460--Hb_011381_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.958851 11.6203 2.48311 0 0.207572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.052575 0 0 0.0332809 30.5555

CAGE analysis