Hb_000039_220

Information

Type -
Description -
Location Contig39: 253985-257364
Sequence    

Annotation

kegg
ID rcu:RCOM_1096250
description structural molecule, putative
nr
ID XP_012446137.1
description PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
swissprot
ID Q8VYN2
description Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1
trembl
ID A0A0B0MUH3
description Vesicle-associated 4-2-like protein OS=Gossypium arboreum GN=F383_24675 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 4-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39066: 254026-257360
cDNA
(Sanger)
(ID:Location)		 026_M04.ab1: 254036-256542 , 050_F03.ab1: 254036-256735

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_220 0.0 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
2 Hb_001133_120 0.0602628309 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
3 Hb_000768_090 0.0612233307 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
4 Hb_002303_070 0.0629286481 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
5 Hb_000317_240 0.0682561908 - - PREDICTED: protein DYAD [Jatropha curcas]
6 Hb_002197_020 0.0739135455 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
7 Hb_001357_350 0.0756073245 - - conserved hypothetical protein [Ricinus communis]
8 Hb_063716_100 0.0756833778 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
9 Hb_000215_110 0.0758782506 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
10 Hb_003226_140 0.0762488857 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
11 Hb_004070_020 0.0785281256 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
12 Hb_000302_270 0.078666521 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
13 Hb_000403_050 0.0791493289 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
14 Hb_001012_010 0.0809616582 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
15 Hb_002530_030 0.0824309913 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
16 Hb_005337_090 0.0828087124 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
17 Hb_009545_080 0.0828255137 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
18 Hb_004046_050 0.082902233 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
19 Hb_021576_100 0.0833643289 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
20 Hb_005357_080 0.0834385139 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000039_220 Hb_000039_220 Hb_001133_120 Hb_001133_120 Hb_000039_220--Hb_001133_120 Hb_000768_090 Hb_000768_090 Hb_000039_220--Hb_000768_090 Hb_002303_070 Hb_002303_070 Hb_000039_220--Hb_002303_070 Hb_000317_240 Hb_000317_240 Hb_000039_220--Hb_000317_240 Hb_002197_020 Hb_002197_020 Hb_000039_220--Hb_002197_020 Hb_001357_350 Hb_001357_350 Hb_000039_220--Hb_001357_350 Hb_000215_110 Hb_000215_110 Hb_001133_120--Hb_000215_110 Hb_000152_500 Hb_000152_500 Hb_001133_120--Hb_000152_500 Hb_000667_070 Hb_000667_070 Hb_001133_120--Hb_000667_070 Hb_001599_040 Hb_001599_040 Hb_001133_120--Hb_001599_040 Hb_001133_120--Hb_002303_070 Hb_000768_090--Hb_000317_240 Hb_000684_380 Hb_000684_380 Hb_000768_090--Hb_000684_380 Hb_000468_060 Hb_000468_060 Hb_000768_090--Hb_000468_060 Hb_005054_350 Hb_005054_350 Hb_000768_090--Hb_005054_350 Hb_000768_090--Hb_000215_110 Hb_002303_070--Hb_000215_110 Hb_003226_140 Hb_003226_140 Hb_002303_070--Hb_003226_140 Hb_002303_070--Hb_001599_040 Hb_005730_120 Hb_005730_120 Hb_002303_070--Hb_005730_120 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220 Hb_002530_030 Hb_002530_030 Hb_000317_240--Hb_002530_030 Hb_000757_060 Hb_000757_060 Hb_000317_240--Hb_000757_060 Hb_000465_460 Hb_000465_460 Hb_000317_240--Hb_000465_460 Hb_058999_020 Hb_058999_020 Hb_000317_240--Hb_058999_020 Hb_000504_140 Hb_000504_140 Hb_000317_240--Hb_000504_140 Hb_000141_250 Hb_000141_250 Hb_002197_020--Hb_000141_250 Hb_007982_080 Hb_007982_080 Hb_002197_020--Hb_007982_080 Hb_000185_070 Hb_000185_070 Hb_002197_020--Hb_000185_070 Hb_001981_030 Hb_001981_030 Hb_002197_020--Hb_001981_030 Hb_002872_030 Hb_002872_030 Hb_002197_020--Hb_002872_030 Hb_000417_130 Hb_000417_130 Hb_001357_350--Hb_000417_130 Hb_001142_030 Hb_001142_030 Hb_001357_350--Hb_001142_030 Hb_003964_070 Hb_003964_070 Hb_001357_350--Hb_003964_070 Hb_001268_240 Hb_001268_240 Hb_001357_350--Hb_001268_240 Hb_000883_020 Hb_000883_020 Hb_001357_350--Hb_000883_020 Hb_001357_350--Hb_000215_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.0489 28.0745 49.1627 27.2943 31.5144 51.7721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.6883 51.673 36.7482 39.8742 21.7933

CAGE analysis