Hb_000041_060

Information

Type -
Description -
Location Contig41: 87796-91524
Sequence    

Annotation

kegg
ID rcu:RCOM_1095430
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002524651.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9SF82
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_1095430 PE=3 SV=1
Gene Ontology
ID GO:0003854
description cinnamoyl- reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40474: 88851-89167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_060 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_000808_170 0.1276549756 - - protein disulfide isomerase, putative [Ricinus communis]
3 Hb_001369_230 0.1329959467 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
4 Hb_001500_070 0.1334304869 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003626_050 0.1344796001 - - malic enzyme, putative [Ricinus communis]
6 Hb_000347_110 0.1361027916 - - BnaA05g25330D [Brassica napus]
7 Hb_004129_050 0.1376484565 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
8 Hb_006846_120 0.1390006485 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
9 Hb_000317_350 0.1414473425 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
10 Hb_011360_060 0.1437206346 - - glycogen phosphorylase, putative [Ricinus communis]
11 Hb_000181_020 0.144108201 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
12 Hb_000505_100 0.1442705654 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100250663 [Vitis vinifera]
13 Hb_009732_020 0.1442765151 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_002213_090 0.1453409082 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
15 Hb_000173_260 0.1462072304 - - hypothetical protein L484_010046 [Morus notabilis]
16 Hb_001731_030 0.147882616 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
17 Hb_180450_010 0.1505168318 - - FF domain-containing family protein [Populus trichocarpa]
18 Hb_000227_040 0.1514052022 - - Stem-specific protein TSJT1, putative [Ricinus communis]
19 Hb_001497_060 0.1538839494 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
20 Hb_003813_120 0.1567396422 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000041_060 Hb_000041_060 Hb_000808_170 Hb_000808_170 Hb_000041_060--Hb_000808_170 Hb_001369_230 Hb_001369_230 Hb_000041_060--Hb_001369_230 Hb_001500_070 Hb_001500_070 Hb_000041_060--Hb_001500_070 Hb_003626_050 Hb_003626_050 Hb_000041_060--Hb_003626_050 Hb_000347_110 Hb_000347_110 Hb_000041_060--Hb_000347_110 Hb_004129_050 Hb_004129_050 Hb_000041_060--Hb_004129_050 Hb_001731_030 Hb_001731_030 Hb_000808_170--Hb_001731_030 Hb_006846_120 Hb_006846_120 Hb_000808_170--Hb_006846_120 Hb_000317_350 Hb_000317_350 Hb_000808_170--Hb_000317_350 Hb_003207_010 Hb_003207_010 Hb_000808_170--Hb_003207_010 Hb_073171_100 Hb_073171_100 Hb_000808_170--Hb_073171_100 Hb_001369_230--Hb_000317_350 Hb_003266_020 Hb_003266_020 Hb_001369_230--Hb_003266_020 Hb_009732_020 Hb_009732_020 Hb_001369_230--Hb_009732_020 Hb_005883_110 Hb_005883_110 Hb_001369_230--Hb_005883_110 Hb_000559_070 Hb_000559_070 Hb_001369_230--Hb_000559_070 Hb_001500_070--Hb_003626_050 Hb_004041_100 Hb_004041_100 Hb_001500_070--Hb_004041_100 Hb_002213_090 Hb_002213_090 Hb_001500_070--Hb_002213_090 Hb_000625_030 Hb_000625_030 Hb_001500_070--Hb_000625_030 Hb_001500_070--Hb_000347_110 Hb_012325_010 Hb_012325_010 Hb_001500_070--Hb_012325_010 Hb_003626_050--Hb_002213_090 Hb_000157_070 Hb_000157_070 Hb_003626_050--Hb_000157_070 Hb_107298_010 Hb_107298_010 Hb_003626_050--Hb_107298_010 Hb_000505_100 Hb_000505_100 Hb_003626_050--Hb_000505_100 Hb_006829_100 Hb_006829_100 Hb_003626_050--Hb_006829_100 Hb_003813_120 Hb_003813_120 Hb_000347_110--Hb_003813_120 Hb_000173_260 Hb_000173_260 Hb_000347_110--Hb_000173_260 Hb_000347_110--Hb_004041_100 Hb_011360_060 Hb_011360_060 Hb_000347_110--Hb_011360_060 Hb_000181_020 Hb_000181_020 Hb_000347_110--Hb_000181_020 Hb_003626_040 Hb_003626_040 Hb_000347_110--Hb_003626_040 Hb_000244_280 Hb_000244_280 Hb_004129_050--Hb_000244_280 Hb_004129_050--Hb_009732_020 Hb_006717_070 Hb_006717_070 Hb_004129_050--Hb_006717_070 Hb_004129_050--Hb_003626_050 Hb_012545_090 Hb_012545_090 Hb_004129_050--Hb_012545_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.16328 6.32218 10.6226 7.83059 3.92008 7.15441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37545 3.12048 4.22082 37.8755 14.3446

CAGE analysis