Hb_000041_070

Information

Type -
Description -
Location Contig41: 111473-112940
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34870g
description POPTRDRAFT_752522; hypothetical protein
nr
ID XP_002300032.1
description hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GHQ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s34870g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40476: 111864-112862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_070 0.0 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
2 Hb_001741_080 0.0747446008 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
3 Hb_001514_180 0.0805894049 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
4 Hb_004206_030 0.0876719877 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
5 Hb_060668_010 0.0889454818 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
6 Hb_002387_060 0.0903503357 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002685_090 0.0933496499 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
8 Hb_024505_040 0.0981428006 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
9 Hb_012725_110 0.1074468005 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
10 Hb_111648_010 0.1130948421 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
11 Hb_015934_020 0.114979971 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
12 Hb_000270_410 0.1165179369 - - -
13 Hb_000444_030 0.1167952256 - - PREDICTED: expansin-A20 [Jatropha curcas]
14 Hb_006816_440 0.1195456203 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_005016_130 0.1209861707 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
16 Hb_000078_010 0.1244214204 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
17 Hb_002235_230 0.127100444 - - latex abundant protein 1 [Hevea brasiliensis]
18 Hb_003106_140 0.1290300524 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001102_010 0.1314706934 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
20 Hb_012799_060 0.1329258076 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000041_070 Hb_000041_070 Hb_001741_080 Hb_001741_080 Hb_000041_070--Hb_001741_080 Hb_001514_180 Hb_001514_180 Hb_000041_070--Hb_001514_180 Hb_004206_030 Hb_004206_030 Hb_000041_070--Hb_004206_030 Hb_060668_010 Hb_060668_010 Hb_000041_070--Hb_060668_010 Hb_002387_060 Hb_002387_060 Hb_000041_070--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_000041_070--Hb_002685_090 Hb_001741_080--Hb_060668_010 Hb_005016_130 Hb_005016_130 Hb_001741_080--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_001741_080--Hb_000078_030 Hb_000444_030 Hb_000444_030 Hb_001741_080--Hb_000444_030 Hb_012799_060 Hb_012799_060 Hb_001741_080--Hb_012799_060 Hb_024505_040 Hb_024505_040 Hb_001514_180--Hb_024505_040 Hb_001514_180--Hb_001741_080 Hb_111648_010 Hb_111648_010 Hb_001514_180--Hb_111648_010 Hb_001514_180--Hb_060668_010 Hb_001514_180--Hb_000444_030 Hb_004206_030--Hb_060668_010 Hb_012725_110 Hb_012725_110 Hb_004206_030--Hb_012725_110 Hb_042729_010 Hb_042729_010 Hb_004206_030--Hb_042729_010 Hb_003106_140 Hb_003106_140 Hb_004206_030--Hb_003106_140 Hb_004206_030--Hb_002387_060 Hb_060668_010--Hb_005016_130 Hb_030765_020 Hb_030765_020 Hb_060668_010--Hb_030765_020 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_002387_060--Hb_183963_020 Hb_000032_220 Hb_000032_220 Hb_002387_060--Hb_000032_220 Hb_002291_030 Hb_002291_030 Hb_002387_060--Hb_002291_030 Hb_000270_410 Hb_000270_410 Hb_002685_090--Hb_000270_410 Hb_002685_090--Hb_015934_020 Hb_002685_090--Hb_012725_110 Hb_002685_090--Hb_002387_060 Hb_002936_050 Hb_002936_050 Hb_002685_090--Hb_002936_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
680.361 4.94033 3.41113 24.9022 319.499 618.271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1262.32 844.487 1149.56 82.742 8.93671

CAGE analysis