Hb_000041_090

Information

Type -
Description -
Location Contig41: 119314-122466
Sequence    

Annotation

kegg
ID rcu:RCOM_1095560
description hypothetical protein
nr
ID XP_012081393.1
description PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
swissprot
ID Q9M3G7
description Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1
trembl
ID A0A067LDN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09577 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40481: 122316-122713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_090 0.0 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
2 Hb_006295_020 0.0802883218 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
3 Hb_002233_100 0.0828157143 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
4 Hb_006816_430 0.0851252273 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
5 Hb_000300_120 0.0864493202 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
6 Hb_003203_030 0.0865283654 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
7 Hb_003440_050 0.0869828449 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
8 Hb_000069_320 0.0887211951 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
9 Hb_004108_100 0.0889159769 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
10 Hb_000406_020 0.0901567317 - - -
11 Hb_003884_030 0.0915009016 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
12 Hb_000265_230 0.0932645334 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
13 Hb_000318_390 0.0943920019 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
14 Hb_000034_040 0.0948440806 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
15 Hb_000803_260 0.0955422163 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
16 Hb_000661_030 0.0961034738 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
17 Hb_000329_750 0.0973283769 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
18 Hb_001259_020 0.0987556848 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
19 Hb_005488_150 0.1001194176 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_007416_160 0.1016508814 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000041_090 Hb_000041_090 Hb_006295_020 Hb_006295_020 Hb_000041_090--Hb_006295_020 Hb_002233_100 Hb_002233_100 Hb_000041_090--Hb_002233_100 Hb_006816_430 Hb_006816_430 Hb_000041_090--Hb_006816_430 Hb_000300_120 Hb_000300_120 Hb_000041_090--Hb_000300_120 Hb_003203_030 Hb_003203_030 Hb_000041_090--Hb_003203_030 Hb_003440_050 Hb_003440_050 Hb_000041_090--Hb_003440_050 Hb_005348_010 Hb_005348_010 Hb_006295_020--Hb_005348_010 Hb_000083_070 Hb_000083_070 Hb_006295_020--Hb_000083_070 Hb_000329_750 Hb_000329_750 Hb_006295_020--Hb_000329_750 Hb_000265_230 Hb_000265_230 Hb_006295_020--Hb_000265_230 Hb_006295_020--Hb_003203_030 Hb_000046_190 Hb_000046_190 Hb_002233_100--Hb_000046_190 Hb_004108_100 Hb_004108_100 Hb_002233_100--Hb_004108_100 Hb_000853_210 Hb_000853_210 Hb_002233_100--Hb_000853_210 Hb_014267_010 Hb_014267_010 Hb_002233_100--Hb_014267_010 Hb_064903_010 Hb_064903_010 Hb_002233_100--Hb_064903_010 Hb_006816_430--Hb_004108_100 Hb_006816_430--Hb_003203_030 Hb_006816_430--Hb_000265_230 Hb_001123_260 Hb_001123_260 Hb_006816_430--Hb_001123_260 Hb_027346_010 Hb_027346_010 Hb_006816_430--Hb_027346_010 Hb_004117_140 Hb_004117_140 Hb_006816_430--Hb_004117_140 Hb_000331_560 Hb_000331_560 Hb_000300_120--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_000300_120--Hb_018118_010 Hb_000300_120--Hb_006295_020 Hb_000300_120--Hb_003203_030 Hb_000816_100 Hb_000816_100 Hb_000300_120--Hb_000816_100 Hb_003203_030--Hb_000331_560 Hb_003203_030--Hb_018118_010 Hb_003203_030--Hb_005348_010 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_012656_030 Hb_012656_030 Hb_003440_050--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_003440_050--Hb_000318_390 Hb_000174_220 Hb_000174_220 Hb_003440_050--Hb_000174_220 Hb_000803_260 Hb_000803_260 Hb_003440_050--Hb_000803_260 Hb_000139_090 Hb_000139_090 Hb_003440_050--Hb_000139_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7199 16.7245 6.59353 5.56317 19.4023 19.3273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.66724 6.62938 11.4889 10.4588 23.5948

CAGE analysis