Hb_000041_100

Information

Type -
Description -
Location Contig41: 125277-139674
Sequence    

Annotation

kegg
ID rcu:RCOM_1095570
description rrm/rnp domain, putative
nr
ID XP_012081373.1
description PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
swissprot
ID Q9LVX1
description Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1
trembl
ID A0A067LAB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09576 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 41-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40482: 125283-134992 , PASA_asmbl_40483: 135061-139466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_100 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
2 Hb_003371_090 0.0463726004 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
3 Hb_002450_020 0.0534096648 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
4 Hb_000297_010 0.0574255841 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
5 Hb_007441_220 0.0590152488 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
6 Hb_000230_500 0.0712948602 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
7 Hb_011386_010 0.0724378378 - - mitochondrial carrier protein, putative [Ricinus communis]
8 Hb_015934_040 0.0729717346 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
9 Hb_001085_060 0.0732574489 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
10 Hb_004374_070 0.0736080853 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
11 Hb_002110_150 0.0747766987 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
12 Hb_009767_110 0.07574764 - - -
13 Hb_000710_060 0.0757627634 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
14 Hb_000056_240 0.0758815807 - - PREDICTED: cullin-3A [Jatropha curcas]
15 Hb_002046_180 0.0761005679 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
16 Hb_001014_030 0.0761433935 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002391_310 0.0763752781 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
18 Hb_004724_150 0.0764250365 - - expressed protein, putative [Ricinus communis]
19 Hb_000041_110 0.0790521615 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
20 Hb_000245_040 0.079325166 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000041_100 Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_000213_100 Hb_000213_100 Hb_003371_090--Hb_000213_100 Hb_007508_090 Hb_007508_090 Hb_003371_090--Hb_007508_090 Hb_003371_090--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_003371_090--Hb_000710_060 Hb_003371_090--Hb_000297_010 Hb_002450_020--Hb_011386_010 Hb_002450_020--Hb_000297_010 Hb_005054_110 Hb_005054_110 Hb_002450_020--Hb_005054_110 Hb_015934_040 Hb_015934_040 Hb_002450_020--Hb_015934_040 Hb_001014_030 Hb_001014_030 Hb_002450_020--Hb_001014_030 Hb_000185_030 Hb_000185_030 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250 Hb_002316_150 Hb_002316_150 Hb_007441_220--Hb_002316_150 Hb_001085_060 Hb_001085_060 Hb_007441_220--Hb_001085_060 Hb_000270_670 Hb_000270_670 Hb_007441_220--Hb_000270_670 Hb_001999_090 Hb_001999_090 Hb_007441_220--Hb_001999_090 Hb_007441_220--Hb_000245_040 Hb_005188_020 Hb_005188_020 Hb_000230_500--Hb_005188_020 Hb_000230_500--Hb_003371_090 Hb_002988_040 Hb_002988_040 Hb_000230_500--Hb_002988_040 Hb_030565_030 Hb_030565_030 Hb_000230_500--Hb_030565_030 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_011386_010--Hb_005054_110 Hb_002078_350 Hb_002078_350 Hb_011386_010--Hb_002078_350 Hb_000329_710 Hb_000329_710 Hb_011386_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_011386_010--Hb_002518_260 Hb_156279_020 Hb_156279_020 Hb_011386_010--Hb_156279_020 Hb_000792_010 Hb_000792_010 Hb_011386_010--Hb_000792_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.24016 14.3101 6.30672 9.34324 8.38802 12.0449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3884 15.3008 19.8808 11.0064 12.6493

CAGE analysis