Hb_000041_220

Information

Type -
Description -
Location Contig41: 306706-321600
Sequence    

Annotation

kegg
ID rcu:RCOM_1095710
description polyribonucleotide nucleotidyltransferase, putative (EC:2.7.7.8)
nr
ID XP_002524669.1
description polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
swissprot
ID Q9S7G6
description Polyribonucleotide nucleotidyltransferase 2, mitochondrial OS=Arabidopsis thaliana GN=PNP2 PE=2 SV=1
trembl
ID B9SFA0
description Polyribonucleotide nucleotidyltransferase, putative OS=Ricinus communis GN=RCOM_1095710 PE=3 SV=1
Gene Ontology
ID GO:0005739
description polyribonucleotide nucleotidyltransferase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40501: 307316-307848 , PASA_asmbl_40502: 310086-314609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_220 0.0 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
2 Hb_006816_320 0.0765226016 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
3 Hb_002046_040 0.0794600175 - - PREDICTED: topless-related protein 4 [Malus domestica]
4 Hb_000398_190 0.0891294553 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
5 Hb_000284_210 0.0960915827 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000236_370 0.0993529146 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
7 Hb_009620_040 0.1005006497 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
8 Hb_000076_080 0.1019311775 - - PREDICTED: protein MOS2 [Jatropha curcas]
9 Hb_001157_060 0.1053842759 - - PREDICTED: putative nitric oxide synthase [Jatropha curcas]
10 Hb_001221_230 0.1064323482 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002097_090 0.1085141333 - - Splicing factor 3A subunit, putative [Ricinus communis]
12 Hb_000009_590 0.1090934278 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]
13 Hb_002007_250 0.1121397477 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003777_270 0.1122580521 - - 60S ribosomal protein L3B [Hevea brasiliensis]
15 Hb_000017_340 0.1125284579 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
16 Hb_006913_040 0.1142765383 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
17 Hb_000209_020 0.1145174284 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
18 Hb_001504_160 0.1146378693 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
19 Hb_028639_060 0.116324044 - - transporter, putative [Ricinus communis]
20 Hb_033642_010 0.1169272181 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000041_220 Hb_000041_220 Hb_006816_320 Hb_006816_320 Hb_000041_220--Hb_006816_320 Hb_002046_040 Hb_002046_040 Hb_000041_220--Hb_002046_040 Hb_000398_190 Hb_000398_190 Hb_000041_220--Hb_000398_190 Hb_000284_210 Hb_000284_210 Hb_000041_220--Hb_000284_210 Hb_000236_370 Hb_000236_370 Hb_000041_220--Hb_000236_370 Hb_009620_040 Hb_009620_040 Hb_000041_220--Hb_009620_040 Hb_006816_320--Hb_000236_370 Hb_012670_140 Hb_012670_140 Hb_006816_320--Hb_012670_140 Hb_000684_420 Hb_000684_420 Hb_006816_320--Hb_000684_420 Hb_000076_080 Hb_000076_080 Hb_006816_320--Hb_000076_080 Hb_000803_150 Hb_000803_150 Hb_006816_320--Hb_000803_150 Hb_000307_200 Hb_000307_200 Hb_002046_040--Hb_000307_200 Hb_002046_040--Hb_000284_210 Hb_025012_010 Hb_025012_010 Hb_002046_040--Hb_025012_010 Hb_000017_340 Hb_000017_340 Hb_002046_040--Hb_000017_340 Hb_000316_030 Hb_000316_030 Hb_002046_040--Hb_000316_030 Hb_002701_080 Hb_002701_080 Hb_000398_190--Hb_002701_080 Hb_001504_160 Hb_001504_160 Hb_000398_190--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_000398_190--Hb_012654_010 Hb_011612_010 Hb_011612_010 Hb_000398_190--Hb_011612_010 Hb_000230_330 Hb_000230_330 Hb_000398_190--Hb_000230_330 Hb_000703_080 Hb_000703_080 Hb_000284_210--Hb_000703_080 Hb_004934_090 Hb_004934_090 Hb_000284_210--Hb_004934_090 Hb_002097_090 Hb_002097_090 Hb_000284_210--Hb_002097_090 Hb_003994_240 Hb_003994_240 Hb_000284_210--Hb_003994_240 Hb_000284_210--Hb_009620_040 Hb_000645_150 Hb_000645_150 Hb_000236_370--Hb_000645_150 Hb_000236_370--Hb_002097_090 Hb_028639_060 Hb_028639_060 Hb_000236_370--Hb_028639_060 Hb_012305_070 Hb_012305_070 Hb_000236_370--Hb_012305_070 Hb_000956_030 Hb_000956_030 Hb_000236_370--Hb_000956_030 Hb_000186_280 Hb_000186_280 Hb_000236_370--Hb_000186_280 Hb_009620_040--Hb_002097_090 Hb_000160_040 Hb_000160_040 Hb_009620_040--Hb_000160_040 Hb_009620_040--Hb_000236_370 Hb_009620_040--Hb_004934_090 Hb_000173_510 Hb_000173_510 Hb_009620_040--Hb_000173_510 Hb_009620_040--Hb_000645_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.35398 3.52301 1.1545 1.25235 8.45498 13.5417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54677 6.36211 4.38515 5.26974 1.24864

CAGE analysis