Hb_000041_240

Information

Type -
Description -
Location Contig41: 344951-346529
Sequence    

Annotation

kegg
ID rcu:RCOM_1095750
description glutaredoxin-1, grx1, putative
nr
ID ABZ88803.1
description glutaredoxin [Hevea brasiliensis]
swissprot
ID P55143
description Glutaredoxin OS=Ricinus communis PE=3 SV=1
trembl
ID B3FNP8
description Glutaredoxin OS=Hevea brasiliensis GN=Grx1 PE=2 SV=1
Gene Ontology
ID GO:0005773
description glutaredoxin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40503: 344801-346473
cDNA
(Sanger)
(ID:Location)		 024_L18.ab1: 344876-346473 , 038_K21.ab1: 344874-346452

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_240 0.0 - - glutaredoxin [Hevea brasiliensis]
2 Hb_003442_070 0.1359688315 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
3 Hb_000252_110 0.1440091618 - - -
4 Hb_004453_080 0.1512318119 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
5 Hb_006153_110 0.1632799405 - - dimethylaniline monooxygenase, putative [Ricinus communis]
6 Hb_007850_080 0.1634193168 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
7 Hb_061195_020 0.166044718 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
8 Hb_000465_230 0.1673767532 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
9 Hb_010174_060 0.1676701244 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
10 Hb_000009_660 0.1709678199 - - -
11 Hb_005285_030 0.1722052308 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
12 Hb_011618_060 0.1755944482 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
13 Hb_004734_040 0.1757331998 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
14 Hb_000506_120 0.1758879632 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
15 Hb_000525_020 0.1771413259 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_002636_080 0.1775255946 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
17 Hb_005245_080 0.1776509029 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
18 Hb_000975_360 0.177919459 - - conserved hypothetical protein [Ricinus communis]
19 Hb_065525_090 0.1788440274 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
20 Hb_001545_160 0.1792273045 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_000041_240 Hb_000041_240 Hb_003442_070 Hb_003442_070 Hb_000041_240--Hb_003442_070 Hb_000252_110 Hb_000252_110 Hb_000041_240--Hb_000252_110 Hb_004453_080 Hb_004453_080 Hb_000041_240--Hb_004453_080 Hb_006153_110 Hb_006153_110 Hb_000041_240--Hb_006153_110 Hb_007850_080 Hb_007850_080 Hb_000041_240--Hb_007850_080 Hb_061195_020 Hb_061195_020 Hb_000041_240--Hb_061195_020 Hb_003442_070--Hb_007850_080 Hb_005285_030 Hb_005285_030 Hb_003442_070--Hb_005285_030 Hb_001341_100 Hb_001341_100 Hb_003442_070--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_003442_070--Hb_001486_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_000252_110--Hb_004453_080 Hb_005656_100 Hb_005656_100 Hb_000252_110--Hb_005656_100 Hb_004931_100 Hb_004931_100 Hb_000252_110--Hb_004931_100 Hb_001171_050 Hb_001171_050 Hb_000252_110--Hb_001171_050 Hb_001433_110 Hb_001433_110 Hb_000252_110--Hb_001433_110 Hb_004453_080--Hb_007850_080 Hb_004453_080--Hb_001433_110 Hb_028487_170 Hb_028487_170 Hb_004453_080--Hb_028487_170 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080 Hb_000331_470 Hb_000331_470 Hb_006153_110--Hb_000331_470 Hb_000010_190 Hb_000010_190 Hb_006153_110--Hb_000010_190 Hb_000217_030 Hb_000217_030 Hb_006153_110--Hb_000217_030 Hb_010098_050 Hb_010098_050 Hb_006153_110--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_006153_110--Hb_007304_090 Hb_011512_070 Hb_011512_070 Hb_006153_110--Hb_011512_070 Hb_007850_080--Hb_005656_100 Hb_033642_080 Hb_033642_080 Hb_007850_080--Hb_033642_080 Hb_007850_080--Hb_008226_080 Hb_002631_180 Hb_002631_180 Hb_007850_080--Hb_002631_180 Hb_015807_100 Hb_015807_100 Hb_061195_020--Hb_015807_100 Hb_029904_030 Hb_029904_030 Hb_061195_020--Hb_029904_030 Hb_000465_230 Hb_000465_230 Hb_061195_020--Hb_000465_230 Hb_061195_020--Hb_007850_080 Hb_000525_020 Hb_000525_020 Hb_061195_020--Hb_000525_020 Hb_061195_020--Hb_033642_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
207.475 321.318 241.941 114.23 102.326 77.3863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
893.116 506.696 345.576 495.605 194.068

CAGE analysis