Hb_000041_250

Information

Type -
Description -
Location Contig41: 346551-350762
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35120g
description POPTRDRAFT_797856; hypothetical protein
nr
ID XP_012081151.1
description PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40505: 346568-349985 , PASA_asmbl_40506: 350007-350696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_250 0.0 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
2 Hb_000638_100 0.08565776 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
3 Hb_005348_120 0.0887964548 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
4 Hb_006915_010 0.0893890236 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_004162_250 0.093242549 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
6 Hb_000675_010 0.1066258074 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
7 Hb_000107_540 0.1140616422 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
8 Hb_006970_030 0.1142126629 - - synaptotagmin, putative [Ricinus communis]
9 Hb_001300_240 0.1152819202 - - shikimate dehydrogenase, putative [Ricinus communis]
10 Hb_000140_460 0.1215141529 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
11 Hb_002636_030 0.1239290384 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
12 Hb_005523_040 0.1242909782 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
13 Hb_012389_010 0.1244107162 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
14 Hb_001541_280 0.1248288169 - - phosphate transporter [Manihot esculenta]
15 Hb_000856_280 0.1258508753 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
16 Hb_022693_010 0.126921344 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_000618_110 0.1275440992 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
18 Hb_004724_260 0.1275954246 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
19 Hb_002122_070 0.1289190723 - - unnamed protein product [Vitis vinifera]
20 Hb_004052_030 0.129159752 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]

Gene co-expression network

sample Hb_000041_250 Hb_000041_250 Hb_000638_100 Hb_000638_100 Hb_000041_250--Hb_000638_100 Hb_005348_120 Hb_005348_120 Hb_000041_250--Hb_005348_120 Hb_006915_010 Hb_006915_010 Hb_000041_250--Hb_006915_010 Hb_004162_250 Hb_004162_250 Hb_000041_250--Hb_004162_250 Hb_000675_010 Hb_000675_010 Hb_000041_250--Hb_000675_010 Hb_000107_540 Hb_000107_540 Hb_000041_250--Hb_000107_540 Hb_000638_100--Hb_006915_010 Hb_004724_260 Hb_004724_260 Hb_000638_100--Hb_004724_260 Hb_004052_030 Hb_004052_030 Hb_000638_100--Hb_004052_030 Hb_002943_020 Hb_002943_020 Hb_000638_100--Hb_002943_020 Hb_002122_070 Hb_002122_070 Hb_000638_100--Hb_002122_070 Hb_005348_120--Hb_004162_250 Hb_002333_040 Hb_002333_040 Hb_005348_120--Hb_002333_040 Hb_005348_120--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_005348_120--Hb_005523_040 Hb_006970_030 Hb_006970_030 Hb_005348_120--Hb_006970_030 Hb_006915_010--Hb_004162_250 Hb_006915_010--Hb_000107_540 Hb_000679_320 Hb_000679_320 Hb_006915_010--Hb_000679_320 Hb_001541_280 Hb_001541_280 Hb_006915_010--Hb_001541_280 Hb_004162_250--Hb_000107_540 Hb_004162_250--Hb_002333_040 Hb_001517_010 Hb_001517_010 Hb_004162_250--Hb_001517_010 Hb_000041_210 Hb_000041_210 Hb_000675_010--Hb_000041_210 Hb_012389_010 Hb_012389_010 Hb_000675_010--Hb_012389_010 Hb_000675_010--Hb_002943_020 Hb_002073_150 Hb_002073_150 Hb_000675_010--Hb_002073_150 Hb_000483_430 Hb_000483_430 Hb_000675_010--Hb_000483_430 Hb_131876_010 Hb_131876_010 Hb_000675_010--Hb_131876_010 Hb_000107_540--Hb_001517_010 Hb_000107_540--Hb_002333_040 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_000107_540--Hb_000679_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0657395 2.84081 21.4584 11.2406 0.0520617 0.190815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.455048 0.621854 0.642262 6.12077 44.3321

CAGE analysis