Hb_000041_270

Information

Type -
Description -
Location Contig41: 383578-391133
Sequence    

Annotation

kegg
ID rcu:RCOM_1454110
description mitochondrial import receptor subunit tom40, putative
nr
ID XP_012068577.1
description PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
swissprot
ID Q9LHE5
description Mitochondrial import receptor subunit TOM40-1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3
trembl
ID A0A067KW88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24475 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial import receptor subunit tom40-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40508: 384510-391015
cDNA
(Sanger)
(ID:Location)		 035_B05.ab1: 387413-391015

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_270 0.0 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
2 Hb_000210_180 0.0546584199 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_096563_010 0.0613438342 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
4 Hb_003126_050 0.0640378852 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
5 Hb_000757_060 0.0647651516 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
6 Hb_001481_090 0.0659459913 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
7 Hb_004491_010 0.0661400132 - - 60S ribosomal protein L51, putative [Ricinus communis]
8 Hb_000317_240 0.0680392442 - - PREDICTED: protein DYAD [Jatropha curcas]
9 Hb_002043_190 0.0696399817 - - rwd domain-containing protein, putative [Ricinus communis]
10 Hb_000640_240 0.0738477087 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
11 Hb_036790_100 0.0767958651 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
12 Hb_000403_050 0.0771564987 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
13 Hb_000059_330 0.0781548333 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
14 Hb_003525_010 0.0782659719 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
15 Hb_000334_280 0.0782705636 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
16 Hb_000656_400 0.0787635463 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
17 Hb_000465_460 0.0789998629 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
18 Hb_001242_060 0.0790591389 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
19 Hb_001766_110 0.0793695858 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
20 Hb_003417_020 0.0796485774 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000041_270 Hb_000041_270 Hb_000210_180 Hb_000210_180 Hb_000041_270--Hb_000210_180 Hb_096563_010 Hb_096563_010 Hb_000041_270--Hb_096563_010 Hb_003126_050 Hb_003126_050 Hb_000041_270--Hb_003126_050 Hb_000757_060 Hb_000757_060 Hb_000041_270--Hb_000757_060 Hb_001481_090 Hb_001481_090 Hb_000041_270--Hb_001481_090 Hb_004491_010 Hb_004491_010 Hb_000041_270--Hb_004491_010 Hb_000210_180--Hb_096563_010 Hb_018838_030 Hb_018838_030 Hb_000210_180--Hb_018838_030 Hb_000656_400 Hb_000656_400 Hb_000210_180--Hb_000656_400 Hb_006332_020 Hb_006332_020 Hb_000210_180--Hb_006332_020 Hb_001242_060 Hb_001242_060 Hb_000210_180--Hb_001242_060 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_003417_020 Hb_003417_020 Hb_003126_050--Hb_003417_020 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_003126_050--Hb_096563_010 Hb_007691_030 Hb_007691_030 Hb_003126_050--Hb_007691_030 Hb_058999_020 Hb_058999_020 Hb_000757_060--Hb_058999_020 Hb_000757_060--Hb_001242_060 Hb_000538_270 Hb_000538_270 Hb_000757_060--Hb_000538_270 Hb_002499_040 Hb_002499_040 Hb_000757_060--Hb_002499_040 Hb_000317_240 Hb_000317_240 Hb_000757_060--Hb_000317_240 Hb_001248_060 Hb_001248_060 Hb_000757_060--Hb_001248_060 Hb_001766_110 Hb_001766_110 Hb_001481_090--Hb_001766_110 Hb_038172_010 Hb_038172_010 Hb_001481_090--Hb_038172_010 Hb_003952_090 Hb_003952_090 Hb_001481_090--Hb_003952_090 Hb_003126_080 Hb_003126_080 Hb_001481_090--Hb_003126_080 Hb_001481_090--Hb_000656_400 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_028995_040 Hb_028995_040 Hb_004491_010--Hb_028995_040 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_004491_010--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.0106 27.8268 23.9263 19.6666 34.1069 42.9827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2546 52.827 29.3881 33.4929 14.6015

CAGE analysis