Hb_000042_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig42: 56592-58303
Sequence    

Annotation

kegg
ID tcc:TCM_031363
description NAC domain protein, IPR003441
nr
ID XP_007021327.1
description NAC domain protein, IPR003441 [Theobroma cacao]
swissprot
ID Q8GY42
description NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1
trembl
ID A0A061F818
description NAC domain protein, IPR003441 OS=Theobroma cacao GN=TCM_031363 PE=4 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41453: 56653-58334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_030 0.0 transcription factor TF Family: NAC NAC domain protein, IPR003441 [Theobroma cacao]
2 Hb_000261_490 0.1041008401 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
3 Hb_002399_010 0.1064364067 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003929_260 0.1135301467 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004109_200 0.1143252287 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
6 Hb_061802_020 0.1145278896 - - zinc finger family protein [Populus trichocarpa]
7 Hb_001913_010 0.1160332933 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
8 Hb_000127_130 0.1163117891 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
9 Hb_002150_080 0.1185911032 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
10 Hb_000078_180 0.118925109 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
11 Hb_000483_350 0.1200798413 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
12 Hb_001073_070 0.1215579654 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
13 Hb_021254_030 0.1219471907 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
14 Hb_005653_060 0.1224165036 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
15 Hb_004324_370 0.1251372422 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
16 Hb_005551_050 0.1254702659 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
17 Hb_004657_050 0.1259849406 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
18 Hb_001318_030 0.1261130793 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
19 Hb_007426_180 0.1265456222 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
20 Hb_006949_050 0.1273976383 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_000042_030 Hb_000042_030 Hb_000261_490 Hb_000261_490 Hb_000042_030--Hb_000261_490 Hb_002399_010 Hb_002399_010 Hb_000042_030--Hb_002399_010 Hb_003929_260 Hb_003929_260 Hb_000042_030--Hb_003929_260 Hb_004109_200 Hb_004109_200 Hb_000042_030--Hb_004109_200 Hb_061802_020 Hb_061802_020 Hb_000042_030--Hb_061802_020 Hb_001913_010 Hb_001913_010 Hb_000042_030--Hb_001913_010 Hb_000078_180 Hb_000078_180 Hb_000261_490--Hb_000078_180 Hb_001318_030 Hb_001318_030 Hb_000261_490--Hb_001318_030 Hb_000457_170 Hb_000457_170 Hb_000261_490--Hb_000457_170 Hb_000261_490--Hb_003929_260 Hb_005843_100 Hb_005843_100 Hb_000261_490--Hb_005843_100 Hb_002399_010--Hb_001913_010 Hb_001073_070 Hb_001073_070 Hb_002399_010--Hb_001073_070 Hb_000554_020 Hb_000554_020 Hb_002399_010--Hb_000554_020 Hb_002375_020 Hb_002375_020 Hb_002399_010--Hb_002375_020 Hb_003025_090 Hb_003025_090 Hb_002399_010--Hb_003025_090 Hb_004324_370 Hb_004324_370 Hb_002399_010--Hb_004324_370 Hb_002150_080 Hb_002150_080 Hb_003929_260--Hb_002150_080 Hb_003929_260--Hb_003025_090 Hb_003929_260--Hb_002399_010 Hb_007575_060 Hb_007575_060 Hb_003929_260--Hb_007575_060 Hb_003929_260--Hb_001073_070 Hb_010381_070 Hb_010381_070 Hb_004109_200--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_000483_350 Hb_000483_350 Hb_004109_200--Hb_000483_350 Hb_004109_200--Hb_002375_020 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_000030_150 Hb_000030_150 Hb_061802_020--Hb_000030_150 Hb_006949_040 Hb_006949_040 Hb_061802_020--Hb_006949_040 Hb_000049_120 Hb_000049_120 Hb_061802_020--Hb_000049_120 Hb_001195_690 Hb_001195_690 Hb_061802_020--Hb_001195_690 Hb_001671_020 Hb_001671_020 Hb_061802_020--Hb_001671_020 Hb_020178_070 Hb_020178_070 Hb_061802_020--Hb_020178_070 Hb_001511_020 Hb_001511_020 Hb_001913_010--Hb_001511_020 Hb_001274_030 Hb_001274_030 Hb_001913_010--Hb_001274_030 Hb_001913_010--Hb_004109_200 Hb_001913_010--Hb_010381_070 Hb_000162_090 Hb_000162_090 Hb_001913_010--Hb_000162_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3889 15.1985 3.9239 3.31383 8.06962 11.9611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9206 17.5179 15.4045 2.63109 3.47197

CAGE analysis