Hb_000042_040

Information

Type -
Description -
Location Contig42: 61975-63132
Sequence    

Annotation

kegg
ID tcc:TCM_031361
description F-box and associated interaction domains-containing protein, putative isoform 1
nr
ID XP_012070622.1
description PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID A0A067L486
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00671 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_040 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
2 Hb_000753_220 0.1504744077 - - hypothetical protein RCOM_1467930 [Ricinus communis]
3 Hb_002585_050 0.1546564514 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000592_150 0.1546595026 - - Os05g0413200 [Oryza sativa Japonica Group]
5 Hb_004228_050 0.1546891805 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
6 Hb_002305_040 0.1549823954 - - TMV resistance protein N, putative [Ricinus communis]
7 Hb_075653_010 0.1550534907 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
8 Hb_007816_010 0.1550627102 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
9 Hb_000265_040 0.1554085878 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
10 Hb_001536_070 0.1554202704 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
11 Hb_107495_020 0.1554975443 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
12 Hb_002837_010 0.1555163911 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
13 Hb_006953_010 0.1558199891 - - cytochrome P450, putative [Ricinus communis]
14 Hb_002049_040 0.1560906648 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
15 Hb_011846_020 0.1562163946 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
16 Hb_182291_010 0.1562403758 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
17 Hb_004598_010 0.1564197791 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
18 Hb_001372_010 0.156469388 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_002186_150 0.1564829347 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
20 Hb_046150_010 0.1564880671 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_000042_040 Hb_000042_040 Hb_000753_220 Hb_000753_220 Hb_000042_040--Hb_000753_220 Hb_002585_050 Hb_002585_050 Hb_000042_040--Hb_002585_050 Hb_000592_150 Hb_000592_150 Hb_000042_040--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_000042_040--Hb_004228_050 Hb_002305_040 Hb_002305_040 Hb_000042_040--Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_000042_040--Hb_075653_010 Hb_004019_130 Hb_004019_130 Hb_000753_220--Hb_004019_130 Hb_000129_060 Hb_000129_060 Hb_000753_220--Hb_000129_060 Hb_162008_030 Hb_162008_030 Hb_000753_220--Hb_162008_030 Hb_001546_100 Hb_001546_100 Hb_000753_220--Hb_001546_100 Hb_029879_040 Hb_029879_040 Hb_000753_220--Hb_029879_040 Hb_002028_230 Hb_002028_230 Hb_000753_220--Hb_002028_230 Hb_007816_010 Hb_007816_010 Hb_002585_050--Hb_007816_010 Hb_002585_050--Hb_000592_150 Hb_002585_050--Hb_004228_050 Hb_002837_010 Hb_002837_010 Hb_002585_050--Hb_002837_010 Hb_002585_050--Hb_002305_040 Hb_002585_050--Hb_075653_010 Hb_000592_150--Hb_004228_050 Hb_000592_150--Hb_002305_040 Hb_000592_150--Hb_075653_010 Hb_000265_040 Hb_000265_040 Hb_000592_150--Hb_000265_040 Hb_001536_070 Hb_001536_070 Hb_000592_150--Hb_001536_070 Hb_004228_050--Hb_002305_040 Hb_004228_050--Hb_075653_010 Hb_004228_050--Hb_000265_040 Hb_004228_050--Hb_001536_070 Hb_002305_040--Hb_075653_010 Hb_002305_040--Hb_000265_040 Hb_002305_040--Hb_001536_070 Hb_107495_020 Hb_107495_020 Hb_002305_040--Hb_107495_020 Hb_075653_010--Hb_000265_040 Hb_075653_010--Hb_001536_070 Hb_075653_010--Hb_107495_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.72781 0.0939473 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.040512 0 0 0

CAGE analysis