Hb_000042_140

Information

Type -
Description -
Location Contig42: 134389-135406
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41640g
description hypothetical protein
nr
ID XP_006370322.1
description hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GVZ2
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s41640g PE=4 SV=1
Gene Ontology
ID GO:0005576
description structural constituent of cell

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_140 0.0 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
2 Hb_003025_070 0.2974150449 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
3 Hb_021419_050 0.2979743997 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
4 Hb_108886_010 0.3080721351 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000252_030 0.31044638 - - Heme-binding protein, putative [Ricinus communis]
6 Hb_178607_010 0.3418816368 - - PREDICTED: uncharacterized protein LOC105789535 [Gossypium raimondii]
7 Hb_015707_010 0.3582042867 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
8 Hb_001338_060 0.3595419582 - - -
9 Hb_000101_260 0.3659636892 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_011671_060 0.3677561848 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
11 Hb_001976_080 0.3704420207 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
12 Hb_074108_010 0.3720978433 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
13 Hb_000000_100 0.3754532578 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
14 Hb_003446_040 0.3767538636 - - -
15 Hb_003760_040 0.3786062366 - - organic anion transporter, putative [Ricinus communis]
16 Hb_062482_010 0.390773644 - - -
17 Hb_161929_010 0.3914051433 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
18 Hb_021156_030 0.3916465132 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
19 Hb_172112_010 0.3946102398 - - hypothetical protein JCGZ_26322 [Jatropha curcas]
20 Hb_012586_030 0.395666248 - - hypothetical protein CICLE_v10014868mg [Citrus clementina]

Gene co-expression network

sample Hb_000042_140 Hb_000042_140 Hb_003025_070 Hb_003025_070 Hb_000042_140--Hb_003025_070 Hb_021419_050 Hb_021419_050 Hb_000042_140--Hb_021419_050 Hb_108886_010 Hb_108886_010 Hb_000042_140--Hb_108886_010 Hb_000252_030 Hb_000252_030 Hb_000042_140--Hb_000252_030 Hb_178607_010 Hb_178607_010 Hb_000042_140--Hb_178607_010 Hb_015707_010 Hb_015707_010 Hb_000042_140--Hb_015707_010 Hb_003025_070--Hb_021419_050 Hb_012399_010 Hb_012399_010 Hb_003025_070--Hb_012399_010 Hb_008835_010 Hb_008835_010 Hb_003025_070--Hb_008835_010 Hb_150851_010 Hb_150851_010 Hb_003025_070--Hb_150851_010 Hb_004680_030 Hb_004680_030 Hb_003025_070--Hb_004680_030 Hb_003025_070--Hb_108886_010 Hb_021419_050--Hb_008835_010 Hb_021419_050--Hb_150851_010 Hb_021419_050--Hb_012399_010 Hb_000061_280 Hb_000061_280 Hb_021419_050--Hb_000061_280 Hb_021419_050--Hb_004680_030 Hb_001338_060 Hb_001338_060 Hb_108886_010--Hb_001338_060 Hb_005045_040 Hb_005045_040 Hb_108886_010--Hb_005045_040 Hb_108886_010--Hb_000252_030 Hb_003777_010 Hb_003777_010 Hb_108886_010--Hb_003777_010 Hb_108886_010--Hb_021419_050 Hb_001021_060 Hb_001021_060 Hb_000252_030--Hb_001021_060 Hb_003952_140 Hb_003952_140 Hb_000252_030--Hb_003952_140 Hb_000252_030--Hb_021419_050 Hb_000252_030--Hb_001338_060 Hb_172112_010 Hb_172112_010 Hb_178607_010--Hb_172112_010 Hb_025457_010 Hb_025457_010 Hb_178607_010--Hb_025457_010 Hb_000590_040 Hb_000590_040 Hb_178607_010--Hb_000590_040 Hb_010317_020 Hb_010317_020 Hb_178607_010--Hb_010317_020 Hb_067188_010 Hb_067188_010 Hb_178607_010--Hb_067188_010 Hb_002232_450 Hb_002232_450 Hb_178607_010--Hb_002232_450 Hb_097968_010 Hb_097968_010 Hb_015707_010--Hb_097968_010 Hb_002028_100 Hb_002028_100 Hb_015707_010--Hb_002028_100 Hb_003881_050 Hb_003881_050 Hb_015707_010--Hb_003881_050 Hb_038011_010 Hb_038011_010 Hb_015707_010--Hb_038011_010 Hb_099864_010 Hb_099864_010 Hb_015707_010--Hb_099864_010 Hb_090497_010 Hb_090497_010 Hb_015707_010--Hb_090497_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.757736 0 0 0.576142 0.714149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.83168 0.19699 0

CAGE analysis