Hb_000042_180

Information

Type -
Description -
Location Contig42: 168793-169647
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_180 0.0 - - -
2 Hb_003360_050 0.1974008574 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_002793_080 0.2187437789 - - ribonuclease t2, putative [Ricinus communis]
4 Hb_000733_150 0.227966929 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
5 Hb_001998_100 0.2443129819 - - -
6 Hb_002193_070 0.249300907 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_003014_010 0.255126995 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
8 Hb_001163_140 0.260081428 - - -
9 Hb_153774_010 0.2611266896 - - conserved hypothetical protein [Ricinus communis]
10 Hb_034905_010 0.26615814 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
11 Hb_020712_050 0.2677095031 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
12 Hb_000003_850 0.272867981 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
13 Hb_009010_040 0.2820479157 - - Peptide transporter, putative [Ricinus communis]
14 Hb_168319_020 0.2821257881 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012565_010 0.2895847915 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
16 Hb_051055_010 0.3036273497 - - -
17 Hb_002675_170 0.3084892574 - - hypothetical protein JCGZ_06235 [Jatropha curcas]
18 Hb_002192_040 0.3104862898 - - -
19 Hb_000002_190 0.3191427447 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
20 Hb_000003_520 0.3191427447 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_000042_180 Hb_000042_180 Hb_003360_050 Hb_003360_050 Hb_000042_180--Hb_003360_050 Hb_002793_080 Hb_002793_080 Hb_000042_180--Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_000042_180--Hb_000733_150 Hb_001998_100 Hb_001998_100 Hb_000042_180--Hb_001998_100 Hb_002193_070 Hb_002193_070 Hb_000042_180--Hb_002193_070 Hb_003014_010 Hb_003014_010 Hb_000042_180--Hb_003014_010 Hb_003360_050--Hb_002193_070 Hb_003360_050--Hb_001998_100 Hb_009010_040 Hb_009010_040 Hb_003360_050--Hb_009010_040 Hb_003360_050--Hb_003014_010 Hb_153774_010 Hb_153774_010 Hb_003360_050--Hb_153774_010 Hb_002793_080--Hb_000733_150 Hb_036537_010 Hb_036537_010 Hb_002793_080--Hb_036537_010 Hb_051055_010 Hb_051055_010 Hb_002793_080--Hb_051055_010 Hb_020712_050 Hb_020712_050 Hb_002793_080--Hb_020712_050 Hb_034905_010 Hb_034905_010 Hb_002793_080--Hb_034905_010 Hb_000733_150--Hb_036537_010 Hb_000733_150--Hb_051055_010 Hb_000733_150--Hb_020712_050 Hb_000733_150--Hb_034905_010 Hb_001998_100--Hb_153774_010 Hb_001998_100--Hb_003014_010 Hb_009111_060 Hb_009111_060 Hb_001998_100--Hb_009111_060 Hb_001998_100--Hb_009010_040 Hb_031822_020 Hb_031822_020 Hb_001998_100--Hb_031822_020 Hb_120496_010 Hb_120496_010 Hb_001998_100--Hb_120496_010 Hb_012565_010 Hb_012565_010 Hb_002193_070--Hb_012565_010 Hb_002193_070--Hb_009010_040 Hb_002675_170 Hb_002675_170 Hb_002193_070--Hb_002675_170 Hb_011900_040 Hb_011900_040 Hb_002193_070--Hb_011900_040 Hb_001335_040 Hb_001335_040 Hb_002193_070--Hb_001335_040 Hb_001892_040 Hb_001892_040 Hb_003014_010--Hb_001892_040 Hb_005976_030 Hb_005976_030 Hb_003014_010--Hb_005976_030 Hb_001591_020 Hb_001591_020 Hb_003014_010--Hb_001591_020 Hb_000258_010 Hb_000258_010 Hb_003014_010--Hb_000258_010 Hb_000733_170 Hb_000733_170 Hb_003014_010--Hb_000733_170 Hb_000530_080 Hb_000530_080 Hb_003014_010--Hb_000530_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 6.57411 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.53595 0 0

CAGE analysis