Hb_000042_200

Information

Type -
Description -
Location Contig42: 175474-178223
Sequence    

Annotation

kegg
ID vvi:100252136
description uncharacterized LOC100252136
nr
ID XP_002284579.1
description PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID E0CSR7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g03480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41467: 175703-178118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_200 0.0 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
2 Hb_033153_060 0.0767733041 - - Transcription elongation factor, putative [Ricinus communis]
3 Hb_002918_290 0.0789502756 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
4 Hb_001953_090 0.0827222374 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
5 Hb_005463_140 0.08566541 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
6 Hb_001284_030 0.0860282065 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_004459_040 0.090364303 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
8 Hb_001155_040 0.0929929524 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
9 Hb_072922_020 0.0955408495 - - SNARE-like superfamily protein [Theobroma cacao]
10 Hb_068056_030 0.0965821341 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
11 Hb_006452_040 0.0981206069 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
12 Hb_000834_030 0.0990471445 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
13 Hb_000320_180 0.0991159823 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
14 Hb_001136_060 0.0997267439 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
15 Hb_000789_230 0.1018977481 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
16 Hb_002631_020 0.1025993269 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
17 Hb_003777_210 0.1035900755 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
18 Hb_000705_290 0.1060793804 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
19 Hb_000224_140 0.1065655701 - - ribonuclease z, chloroplast, putative [Ricinus communis]
20 Hb_005045_070 0.1068585149 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]

Gene co-expression network

sample Hb_000042_200 Hb_000042_200 Hb_033153_060 Hb_033153_060 Hb_000042_200--Hb_033153_060 Hb_002918_290 Hb_002918_290 Hb_000042_200--Hb_002918_290 Hb_001953_090 Hb_001953_090 Hb_000042_200--Hb_001953_090 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_001284_030 Hb_001284_030 Hb_000042_200--Hb_001284_030 Hb_004459_040 Hb_004459_040 Hb_000042_200--Hb_004459_040 Hb_033153_060--Hb_004459_040 Hb_006541_010 Hb_006541_010 Hb_033153_060--Hb_006541_010 Hb_007576_170 Hb_007576_170 Hb_033153_060--Hb_007576_170 Hb_007065_010 Hb_007065_010 Hb_033153_060--Hb_007065_010 Hb_000789_230 Hb_000789_230 Hb_033153_060--Hb_000789_230 Hb_068056_030 Hb_068056_030 Hb_002918_290--Hb_068056_030 Hb_002918_290--Hb_001284_030 Hb_000224_140 Hb_000224_140 Hb_002918_290--Hb_000224_140 Hb_002918_290--Hb_033153_060 Hb_002918_290--Hb_004459_040 Hb_002878_010 Hb_002878_010 Hb_001953_090--Hb_002878_010 Hb_001953_090--Hb_002918_290 Hb_000322_140 Hb_000322_140 Hb_001953_090--Hb_000322_140 Hb_001842_040 Hb_001842_040 Hb_001953_090--Hb_001842_040 Hb_001953_090--Hb_001284_030 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_005463_140--Hb_000224_140 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280 Hb_000046_350 Hb_000046_350 Hb_001284_030--Hb_000046_350 Hb_001284_030--Hb_033153_060 Hb_001284_030--Hb_068056_030 Hb_161175_010 Hb_161175_010 Hb_001284_030--Hb_161175_010 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_004459_040--Hb_000224_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8293 8.58099 19.4752 60.6249 23.7232 36.5281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.442 141.92 62.5468 25.8645 48.6787

CAGE analysis