Hb_000042_240

Information

Type -
Description -
Location Contig42: 203049-203720
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_240 0.0 - - -
2 Hb_005568_010 0.1331007955 - - -
3 Hb_052941_010 0.1415486549 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
4 Hb_042223_010 0.1628015702 - - Protein Z, putative [Ricinus communis]
5 Hb_001902_120 0.1803054409 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
6 Hb_010174_070 0.1877936095 - - -
7 Hb_001741_040 0.2048181472 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
8 Hb_156473_010 0.2193981445 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
9 Hb_001425_050 0.2242044579 - - -
10 Hb_002045_200 0.2268372087 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
11 Hb_000227_200 0.2277228198 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
12 Hb_064885_080 0.2319832683 - - -
13 Hb_001587_210 0.2358429061 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
14 Hb_003913_140 0.2410115899 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
15 Hb_001114_340 0.245737935 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
16 Hb_000856_370 0.2488553549 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
17 Hb_000784_040 0.2528116074 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
18 Hb_179520_010 0.2622492167 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
19 Hb_000322_190 0.2676138122 - - -
20 Hb_000363_150 0.2683963129 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]

Gene co-expression network

sample Hb_000042_240 Hb_000042_240 Hb_005568_010 Hb_005568_010 Hb_000042_240--Hb_005568_010 Hb_052941_010 Hb_052941_010 Hb_000042_240--Hb_052941_010 Hb_042223_010 Hb_042223_010 Hb_000042_240--Hb_042223_010 Hb_001902_120 Hb_001902_120 Hb_000042_240--Hb_001902_120 Hb_010174_070 Hb_010174_070 Hb_000042_240--Hb_010174_070 Hb_001741_040 Hb_001741_040 Hb_000042_240--Hb_001741_040 Hb_005568_010--Hb_052941_010 Hb_005568_010--Hb_001902_120 Hb_002045_200 Hb_002045_200 Hb_005568_010--Hb_002045_200 Hb_001425_050 Hb_001425_050 Hb_005568_010--Hb_001425_050 Hb_002326_170 Hb_002326_170 Hb_005568_010--Hb_002326_170 Hb_052941_010--Hb_001902_120 Hb_052941_010--Hb_002045_200 Hb_052941_010--Hb_001425_050 Hb_052941_010--Hb_002326_170 Hb_156473_010 Hb_156473_010 Hb_042223_010--Hb_156473_010 Hb_100873_030 Hb_100873_030 Hb_042223_010--Hb_100873_030 Hb_000227_200 Hb_000227_200 Hb_042223_010--Hb_000227_200 Hb_001587_210 Hb_001587_210 Hb_042223_010--Hb_001587_210 Hb_000784_040 Hb_000784_040 Hb_042223_010--Hb_000784_040 Hb_001902_120--Hb_002045_200 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_001902_120--Hb_010174_070 Hb_010174_070--Hb_179520_010 Hb_108528_010 Hb_108528_010 Hb_010174_070--Hb_108528_010 Hb_064885_080 Hb_064885_080 Hb_010174_070--Hb_064885_080 Hb_001114_340 Hb_001114_340 Hb_010174_070--Hb_001114_340 Hb_004064_020 Hb_004064_020 Hb_010174_070--Hb_004064_020 Hb_003913_140 Hb_003913_140 Hb_001741_040--Hb_003913_140 Hb_001741_040--Hb_000227_200 Hb_000103_110 Hb_000103_110 Hb_001741_040--Hb_000103_110 Hb_002450_070 Hb_002450_070 Hb_001741_040--Hb_002450_070 Hb_001638_210 Hb_001638_210 Hb_001741_040--Hb_001638_210 Hb_000972_010 Hb_000972_010 Hb_001741_040--Hb_000972_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.213601 0.16779 0.530953 0 0

CAGE analysis