Hb_000042_260

Information

Type -
Description -
Location Contig42: 210402-214693
Sequence    

Annotation

kegg
ID cmo:103493362
description uncharacterized LOC103493362
nr
ID XP_012070657.1
description PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A5BZZ2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g03630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41471: 210464-215004 , PASA_asmbl_41472: 210464-214692 , PASA_asmbl_41474: 214167-214308
cDNA
(Sanger)
(ID:Location)		 004_J22.ab1: 210496-215004 , 042_N06.ab1: 210498-214692

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_260 0.0 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
2 Hb_019516_100 0.0494829816 - - 40S ribosomal protein S14, putative [Ricinus communis]
3 Hb_172221_010 0.0586510174 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
4 Hb_002588_010 0.061968232 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
5 Hb_002909_130 0.0666840458 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_000329_020 0.0676577024 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
7 Hb_026398_010 0.0731432713 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
8 Hb_008948_050 0.0823584984 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
9 Hb_000093_110 0.0839019379 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
10 Hb_000062_650 0.0858857939 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
11 Hb_000203_020 0.0862135533 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_001158_230 0.0863391975 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
13 Hb_011311_010 0.0885332435 - - 60S ribosomal protein L27C [Hevea brasiliensis]
14 Hb_007944_040 0.0894454463 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
15 Hb_000062_390 0.0899388682 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
16 Hb_000915_120 0.0929858552 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
17 Hb_009384_020 0.094889722 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
18 Hb_012753_230 0.0951991628 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
19 Hb_000645_140 0.0963998346 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
20 Hb_002660_030 0.0972604336 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000042_260 Hb_000042_260 Hb_019516_100 Hb_019516_100 Hb_000042_260--Hb_019516_100 Hb_172221_010 Hb_172221_010 Hb_000042_260--Hb_172221_010 Hb_002588_010 Hb_002588_010 Hb_000042_260--Hb_002588_010 Hb_002909_130 Hb_002909_130 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000042_260--Hb_026398_010 Hb_019516_100--Hb_002588_010 Hb_001158_230 Hb_001158_230 Hb_019516_100--Hb_001158_230 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020 Hb_172221_010--Hb_000329_020 Hb_172221_010--Hb_026398_010 Hb_172221_010--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_172221_010--Hb_002588_010 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_002909_130--Hb_000329_020 Hb_001085_270 Hb_001085_270 Hb_002909_130--Hb_001085_270 Hb_002909_130--Hb_001158_230 Hb_008948_050 Hb_008948_050 Hb_002909_130--Hb_008948_050 Hb_000329_020--Hb_026398_010 Hb_000331_640 Hb_000331_640 Hb_000329_020--Hb_000331_640 Hb_000329_020--Hb_019516_100 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_026398_010--Hb_002588_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.7203 20.8745 39.452 42.4656 41.4996 52.4598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
118.612 327.2 66.2237 46.5933 29.4489

CAGE analysis